BAC Information

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BAC

Clone NameMSMg01-212F10
Chromosome3 (Build37)
Map Location 13,121,082 - 13,121,756
singlet/doubletsinglet
Overlap genenone
Upstream geneEG621965, LOC100039798, EG668033, LOC668037
Downstream geneLOC100039823, LOC100039861, 0710005M24Rik, LOC100041679, LOC100041667, LOC100039882
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-212F10.T7 (MSMg01no212_f10.b1)MSMg01-212F10.TJ (MSMg01no212_f10.g1)
ACCAG393736AG393737
length728996
length of high quality
(start - end)		678 (51 - 728)---
definitionCHROMAT_FILE: MSMg01no212_f10.b1 PHD_FILE: MSMg01no212_f10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:04 2005CHROMAT_FILE: MSMg01no212_f10.g1 PHD_FILE: MSMg01no212_f10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTAGAAAGAGCTTTGAACAAGCTCCCTAGAATTTTCTTGCA
ACTTGGGTCTATATAAACTCTTATATATTAGTACCTAGACCTCAGAAGAA
GTTACTTACCTACTTGAAATTATGAAATTTTAGTAAAATAATAGACTTAT
TCATGCTCCATGAAATGGTTTATTGAGCATTCACAGTTAATATTAAGCCA
CATTATCTCTCAGATGTAAGCAAAAGAATAGAATTGTTCTCATTTGTTTA
TTAGTGTTCTTCTGTTCTGTAAAATTACATTTATGAAAATATTAGTGCTT
TATCCTAACTTTGTTTTGACTCTTGATGAGCAAATTAGAAACCTGGAGCA
ATTTCTCTTCAGTCAGGTAAATCCTTTACTGAAACTAAAGAATATATTCA
GAATGAAGGCCTCCCTATTAGGGACTTTGTCTCATTACAGAACTAGTTTG
ACTCAAAGAAAAAAGGGGTGGATGGTGACTATTGGGAGTGTAATTCAAAT
AGTCTGATGATGTGGAATAGTTTGAGATTGTAGAAACACAGCTGGACAAT
GGCACATCAAATTTTATCCTGGGTAAATCTACCTGTATTATAATTGGGGG
AAAAAGATAGGAGTTGTCCAAAACAAGTTTCAGAACTGGATATGANAGAT
CATCTAGTCATGGATCTTAATTTCTTTT

ATCTCTTATATTTTTTGATTTACGTNAGTGGGTTTTTCGTTTTCCCTTCT
CTCCTTTGTAGTTACTCTTTTTTTATATCCTTTTATTTACTTTCTCCTAT
TTTTTCCTTTTCCCTTTCTCGTTCTTTATTTTCACCTCTTTTTCTCCTAT
TTCCCTCCGCGGCTCTTACCTTTGTTATTTTTCGTTGCTTTGGTTATTTT
CTAGTTGTTTTATCATTTATTTTTGTTCGTGTATATCTGTGTTTTTTTTT
TTTGTTTTGTGTTTGTTTCTTTTTCTTTTTCTTTTTGTAATTTTTATATT
TTTTTTTTTTCTATGTTTCCTTTTTTTTTTTAGTCTTTGTTTCTTCGTTA
TGTTTGTTTTAGGTCGTTTTATTTACGTTTTTTTTCTTTTTTTTGTGTGT
TTGTACATGCGCGCAGAGAGCACACAAGGAATTTTTTGGGTAGTTTTCCC
CCCCCCCCCCCCCCGCAAGGTTAGTGTTTTGAGGTGTTATTGGGTGTGGC
GGGTTGTTTTGTCCCAAAGAAATTACGATAAATACATTGGGGGGGGGGGT
GGGGGGGTGGGTTTTATTTTTTCGAGATTTATTTGCGTTTTCGCTTTTTT
TTCTTAGTTTGTTGCTCTTTTTTGTATTTGGTTGTTTTTTGGTGTTGTGT
CTTTATTTCTTGTTTTGTTTTTGTCGGATCTGCACTCTTCGTGTGTTATG
TCCTCCGATTGAACATTATATTGTTAATTATTATTATTATCTTCCTCACC
TACCCTTATTCTTTGTTCGGGCTCGGTTTGTGTTTTTCGTTACCTATTTA
CTCTTGCGTGCTATGTTGTGTGTAGATCTCGGGTTGATGGTGGAGGATGA
GGCGTTTATCTAATTTTATATTTCAAGTCTTGTGTTCTCTTCTCACCTAC
CGTTTGTGTTCCTTACTTGTTCCTCTGATCCTTGTAGTTTTTCTCTTTTC
TCATATCACTTTGTCTTTTCTGCGTCCCTGCTGCCCGTCCATTCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no212_f10.b1 MSMg01no212_f10.b1 CHROMAT_FILE:
MSMg01no212_f10.b1 PHD_FILE: MSMg01no212_f10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:04 2005
         (678 letters)



>mm_chr3_13120878_13121956
          Length = 1079

 Score = 1268 bits (656), Expect = 0.0
 Identities = 670/675 (99%), Gaps = 1/675 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctagaaagagctttgaacaagctccctagaattttcttgcaacttgggtctatat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879 gaattctagaaagagctttgaacaagctccctagaattttcttgcaacttgggtctatat 820

                                                                       
Query: 65  aaactcttatatattagtacctagacctcagaagaagttacttacctacttgaaattatg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 aaactcttatatattagtacctagacctcagaagaagttacttacctacttgaaattatg 760

                                                                       
Query: 125 aaattttagtaaaataatagacttattcatgctccatgaaatggtttattgagcattcac 184
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 aaattttagtaaagtaatagacttattcatgctccatgaaatggtttattgagcattcac 700

                                                                       
Query: 185 agttaatattaagccacattatctctcagatgtaagcaaaagaatagaattgttctcatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 agttaatattaagccacattatctctcagatgtaagcaaaagaatagaattgttctcatt 640

                                                                       
Query: 245 tgtttattagtgttcttctgttctgtaaaattacatttatgaaaatattagtgctttatc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 tgtttattagtgttcttctgttctgtaaaattacatttatgaaaatattagtgctttatc 580

                                                                       
Query: 305 ctaactttgttttgactcttgatgagcaaattagaaacctggagcaatttctcttcagtc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 579 ctaactttgttttgactcttgatgagcaaattagaaacctggagcaatttctcttcagtt 520

                                                                       
Query: 365 aggtaaatcctttactgaaactaaagaatatattcagaatgaaggcctccctattaggga 424
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 519 aggtaaatcctttactgaaactaaagaacatattcagaatgaaggcctccctattaggga 460

                                                                       
Query: 425 ctttgtctcattacagaactagtttgactcaaagaaaaaaggggtggatggtgactattg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 ctttgtctcattacagaactagtttgactcaaagaaaaaaggggtggatggtgactattg 400

                                                                       
Query: 485 ggagtgtaattcaaatagtctgatgatgtggaatagtttgagattgtagaaacacagctg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 ggagtgtaattcaaatagtctgatgatgtggaatagtttgagattgtagaaacacagctg 340

                                                                       
Query: 545 gacaatggcacatcaaattttatcctgggtaaatctacctgtattataattggggg-aaa 603
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 339 gacaatggcacatcaaattttatcctgggtaaatctacctgtattataattgggggaaaa 280

                                                                       
Query: 604 aagataggagttgtccaaaacaagtttcagaactggatatganagatcatctagtcatgg 663
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 279 aagataggagttgtccaaaacaagtttcagaactggatatgaaagatcatctagtcatgg 220

                          
Query: 664 atcttaatttctttt 678
           |||||||||||||||
Sbjct: 219 atcttaatttctttt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1079
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1069
Effective search space:   714092
Effective search space used:   714092
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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