BAC Information

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BAC

Clone NameMSMg01-212L12
Chromosome3 (Build37)
Map Location 17,077,713 - 17,077,993
singlet/doubletsinglet
Overlap genenone
Upstream geneYthdf3, LOC100040034, LOC100040059
Downstream geneEG383936, LOC622737, ENSMUSG00000074674, LOC100040120, Cypt12, LOC545508, Bhlhb5, Cyp7b1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-212L12.T7 (MSMg01no212_l12.b1)MSMg01-212L12.TJ (MSMg01no212_l12.g1)
ACCAG393973AG393974
length844731
length of high quality
(start - end)
229 (49 - 277)282 (76 - 357)
definitionCHROMAT_FILE: MSMg01no212_l12.b1 PHD_FILE: MSMg01no212_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:34 2005CHROMAT_FILE: MSMg01no212_l12.g1 PHD_FILE: MSMg01no212_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCACAGTGTTATGGGCCTGAGGGAGATAACCCTTCCGCTAACT
AGCTACAGCACTCTTGAGAGCAAGTGCTACACCTCCCCTGGATAACAAAG
AAGAGCTGACCCTGATGATGAGGGCTCAGGTGAGCCAGCCCTGAGGGTAA
GAGCACAGGTGACCTGTCCCCTCCACTTGTATGCCTTGAGGTGGAGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTAGTATAATAAATATCTNTTTTAA
TGATTTTTAGAGACAATATTTTTTTTTTTTGTTATATGAGTGGGTGCTGG
GGAAAAGAGATTTTTTGATATTTTTCCCCACCCCCCCCCCCCAAGGAAAG
TTGATTAAATTTATAATTGATGGTTGTTGTGTCCCACACACACAAAAAAA
AAAAATGTTTTTGGGGTGGCGGGTGTACCTTTCACATGTACTTGTTTGAT
GACCCGCCACTGATAGTTCTTACACCCTCATATACCTTCTTTTTTATTCA
ATACCCCCCCATACACCCGTTTCTAGTATTATTATTATTTTCCGCTGCAT
CCCGTCCTTATTTTTTCCCTCGTCCCGGCCTACCCAAACATTTCCGCCTG
CTTTATTCACTCTGTATAGGAGCAATCTTTCTCTATAGTTATTCTATCGT
CCCCCTCCCCTTCCAATTGAATATAATTATTCTCCATCTTATAGATACCC
CGTCCTTTATCCCGTATATATTGCCTATTCTCAATCGCCTCTACCGCTCC
ATCTCTTCCATCCTACCTTTTTATTTACTCTCCTCCTCTTCTCT
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTCAGCTCGTTGTTGAGCTGAATA
ATTTTTATATTTCAAAATTTAGTTCCACATCTCTGGGAGGAAGAAGCTAA
TTCTTCACATCTATTGAAGTTCCCTGTTGTGTGATAAGATGTTTCCTGGG
AGACACAACACATGTATGTCTAAAGTATGGATGTCATCAAAGTACAACTT
GGAGAACCCATGAGTTGTATAGGGACTACTTGTAGAAATATGTAGGGGAG
GTTACATACAGAAGCAGAAATTACTCAAAAACAGCTGCAGCACCAAATCT
CTGGCCTTACCTGGTGCACCCTTCAGCCGCCAGGGAAAGAGTGCAAGCAG
GGAGGAGAATTGAAACAGCCTCTGATAGAAGACCTGGCTCAGAATCTCTG
CACTGTGCAAAGCCAAGCTGGGAGGGGGGTGGGGGGCTTGGCTATCAAGC
AGAGGTGCAGGGGAGCTTCTAGCAGCTAAAGCTTCAGAACTTTCTCTTCC
CAGGAAGTGTTGCAGATCTTATACTTGAGATGCTCTCAGGTGATGGAGCA
ATTGTCACACACCTTTAATCCTTCTGGGTAGCATCTTATATACAGTTTTG
AGGTGGGTTGGGGTCTGACAGCAAATGCTTCCTATTGGTTTACCCTGAGA
TGTTAGGCATAGTTCGTTTGCTTGTGATGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no212_l12.g1 MSMg01no212_l12.g1 CHROMAT_FILE:
MSMg01no212_l12.g1 PHD_FILE: MSMg01no212_l12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:34 2005
         (282 letters)



>mm_chr3_17077513_17078194
          Length = 682

 Score =  520 bits (269), Expect = e-152
 Identities = 278/281 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctcagctcgttgttgagctgaataatttttatatttcaaaatttagttccacatctctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctcagctcgttgttgagctgaataatttttatatttcaaaatttagttccacatctctg 260

                                                                       
Query: 61  ggaggaagaagctaattcttcacatctattgaagttccctgttgtgtgataagatgtttc 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 261 ggaggaagaagctaattcttcacatctattgaagttctctgttgtgtgacaagatgtttc 320

                                                                       
Query: 121 ctgggagacacaacacatgtatgtctaaagtatggatgtcatcaaagtacaacttggaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgggagacacaacacatgtatgtctaaagtatggatgtcatcaaagtacaacttggaga 380

                                                                       
Query: 181 acccatgagttgtatagggactacttgtagaaatatgtaggggaggttacatacagaagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acccatgagttgtatagggactacttgtagaaatatgtaggggaggttacatacagaagc 440

                                                    
Query: 241 agaaattactcaaaaacagctgcagcaccaaatctctggcc 281
           |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 agaaattactcaaaaacagctgcatcaccaaatctctggcc 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)