NCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCACTTATATTCAAAAATAGTTACTCACTTGTGAGGCAGAGGCA
GAGGCAGGAGAATCTCTCTGAGTCCGAGGCCGTCCTGGTCTATATAACAG
TACCAGGCCAGCCAAGAATACATAGTGAACCCCTGTCTCAGAAACAATTA
TTGTATGTGTTAGCATTTTTCTAAGTAATGAGGTAATTCATACTAATTAT
TAAGACATGTGAAATTTAATTTTTAAAAAAAAACTCCATAATAATTTTGT
TGTGGCTGAATTATCTAAAATGCTACTGAGAATTGGCAATCTTAGCCTAC
TGACCTTTTCTTCATTTCACTAATACTTCCTTTTTTGTAGCTCACAGACC
CAGATATATATACCTTTACCTGAGTTTGAGTGGTGAGCCTGCAAGTGGGT
TGGCTTGACCCACTCCCCAAGATGGTTCTGACCTCATTTGGGAAAATACG
TTGGGATTTGACAAGGGGTTTAATATCCTGAGGAACAACTTTGTCAGTCA
GCTTTAAACATTCTTGTTACATTTATTTGTGGAGAGGGCATATGCTACAC
CTGGCCGGAGTCTCGTCTCTCCTTCTACCATGTAGGTCCTAGGGATGGCT
CTTAGGTCCCTCGGCTCGGCACATGCTCCATCTACTGCACTGTCTCCATG
GCCCCATCACTCAGCCTG

NCCATCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTTTGAGCCC
CATTTTTTAATGGGGTTATCTGATTTTCTGGAGTACTACTCTGCTATTAA
AGAGAATGAATTTATAAAATTCCTAGGCAAATGGATGGACCTGGAGGGTA
TCATTCTGAGTGAGGTAACCCAATCACAAAAGAACTCACATGATATATAC
TCACTGATAAGTGGCTATTAACCCAGAAACTTAGAATACCCAAGTTACAA
GTTGCAAAACACATGAAACTCAAAAAGAATGAAGACCAAAGTGTGGTCAC
TTTGCCCCTTCTTTTTATTGGAACCACCCCACCCATGGAAGGAGTTACAG
AGACAAAGTTTGGAACTGAGACGAAAGGATGAACCATCTAGAGACTGCCG
CACCTGGGGATCCTTCCCATAATCAGCCTCCAAATGCAGACACCATCGCA
TATGCCAGCAAGATTTTGCTGAAAGGACCCTGATATAGGTGTCTCGTGTG
ATGCTATGCCAGTGCCTGGCAAACACAGAAGTGGATGCTCACAGTCAGCT
ATTGGATGGAACACAGAACCCCCAATGGAGGAGCTAGAGAAAGTACCTAA
GGAGCTAAAGGGGTCTGCAACCCTATAGGTGGAACAACAATATGAACTAA
CCAGTACCCCCAGAG

Query= MSMg01no212_n13.b1 MSMg01no212_n13.b1 CHROMAT_FILE:
MSMg01no212_n13.b1 PHD_FILE: MSMg01no212_n13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:44 2005
         (589 letters)



>mm_chr3_85865270_85866258
          Length = 989

 Score = 1067 bits (552), Expect = 0.0
 Identities = 575/586 (98%), Gaps = 6/586 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcacttatattcaaaaatagttactcacttgtgaggcagaggcagaggcaggaga 63
           |||||||||||||||||||||||| |||||||||||||||||||||||||      ||||
Sbjct: 210 ggaattcacttatattcaaaaataattactcacttgtgaggcagaggcag------gaga 263

                                                                       
Query: 64  atctctctgagtccgaggccgtcctggtctatataacagtaccaggccagccaagaatac 123
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atctctctgagtttgaggccgtcctggtctatataacagtaccaggccagccaagaatac 323

                                                                       
Query: 124 atagtgaacccctgtctcagaaacaattattgtatgtgttagcatttttctaagtaatga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atagtgaacccctgtctcagaaacaattattgtatgtgttagcatttttctaagtaatga 383

                                                                       
Query: 184 ggtaattcatactaattattaagacatgtgaaatttaatttttaaaaaaaaactccataa 243
           |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 384 ggtaattcatactaattattaagacatgtgaaatttaatttttttaaaaaaactccataa 443

                                                                       
Query: 244 taattttgttgtggctgaattatctaaaatgctactgagaattggcaatcttagcctact 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 taattttgttgtggctgaattatctaaaatgctactgagaattggcaatcttagcctact 503

                                                                       
Query: 304 gaccttttcttcatttcactaatacttccttttttgtagctcacagacccagatatatat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gaccttttcttcatttcactaatacttccttttttgtagctcacagacccagatatatat 563

                                                                       
Query: 364 acctttacctgagtttgagtggtgagcctgcaagtgggttggcttgacccactccccaag 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 acctttacctgagtttgagtggtgagcctgcaagtgggttggcttgacccactccccaag 623

                                                                       
Query: 424 atggttctgacctcatttgggaaaatacgttgggatttgacaaggggtttaatatcctga 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 atggttctgacctcatttgggaaaatacgttgggatttgacaaggggtttaatatcctga 683

                                                                       
Query: 484 ggaacaactttgtcagtcagctttaaacattcttgttacatttatttgtggagagggcat 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ggaacaactttgtcagtcagctttaaacattcttgttacatttatttgtggagagggcat 743

                                                         
Query: 544 atgctacacctggccggagtctcgtctctccttctaccatgtaggt 589
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 atgctacacctggccggagtctcgtctctccttctaccatgtaggt 789


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space:   566841
Effective search space used:   566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)