BAC Information

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BAC

Clone NameMSMg01-212O06
Chromosome3 (Build37)
Map Location 147,729,114 - 147,729,419
singlet/doubletsinglet
Overlap genenone
Upstream genePpia-ps3_1528.1
Downstream geneLOC100040354, Lphn2, LOC100040368
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-212O06.T7 (MSMg01no212_o06.b1)MSMg01-212O06.TJ (MSMg01no212_o06.g1)
ACCAG394082AG394083
length708703
length of high quality
(start - end)
314 (44 - 357)---
definitionCHROMAT_FILE: MSMg01no212_o06.b1 PHD_FILE: MSMg01no212_o06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:47 2005CHROMAT_FILE: MSMg01no212_o06.g1 PHD_FILE: MSMg01no212_o06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATTTGAATTGGAACAAAAATAATTTGATGGATGCTATTAGGTTAATT
AAATATTTTATTTTCTTTATGTTTATTTATTATACATCAGAAAAGCAGTG
ATCTCAGACACAATGTATCTTTGGTAATTACAGGGGAGACTATAGGTTAG
TGTCCTTAATTTGTTCACATGAAAAGTAGATTATACATTCAAGCCATTTC
AAAACAATTGCCATGGTTGTACAAATAAAAACATTTTGTATACAAACTTT
GGTTTTTATTGCATAACTTTCATAAATAGGAGCCAGAAAGAAATGTTTTG
CTTTTTTTGTTCCACCCCTCCCCCCCCATTCTTAGATTGATCTGAGTGCA
ATTTAGCAGACCCCAACCCAAAGAACTGGATCTTTGAAAATATGATAGAC
AGAATCTAGTTTCCACAAATAATATCAACTGACAATTTGAGTGCCCTCTG
ATCATATAAGTATATGTATATTTTATAAGCATGTTTACATTACTGTATTG
CCATTAATATTATTAAAAAATTGTGCACAACTATGTTGTACTACTTATAA
AGTGACTTGAATTACAAGAAATACATTTTCCAATGGTTTACCATTATCGA
CTTTGTAATATAATGAACACATATTTTACTACTTGCTTACTTGAATATAA
CTGGGAAT
GAXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAAAAGGGAGGNNGAANAN
AGGAATTCCCAGAGAAAGGANGNNANNAAGAANGGNNGAANNAGGNAANT
NNNNAGAATTGGCCCCCAAAAGNGAGGGAAGGAGGNANAAAGANAAAGAN
AGGAGTTGAGANGAAAGGAGGGANNAGGAAGAGNAAGGAATANNNAGGGA
GGGAGNGGAAAAGCAGGAGNGAAAGGNGGAAANNANGGGAGATTTTATTT
AGATTTTATNGAAAGGANATAGATGTAGNTGTATGTTGTGAGAGTATGGA
GGGGACTTTTTTTTTTTTAAGGGGAGGCGCANAGACAGAAAAGGGTTTTA
GATACTCTCCAAACAGGCCCCCCNAGAGAAAGAAGAAAGGAGGGGGGGGG
GGCCGCAAACCCCCAGGNGGAAAAACGGNCNNCGCNCCGGGGGCCCCCGC
GAACCCGGAGCCAAGCGCGCGACGGACCACAAGACGGACCAGACGCGCCG
CCCCGGAAAGAACGGACCAAAGCACACGCGCACACGAAACCGGCCCGAAC
CGGGGCAAGCCAGCCCCAGACACCGCCCCGCGAACGAAGAGGAGACCGCG
AAGCAACCCGGAAAAACAAGGAAAAAGGAGAACAACCAACACAGATTTTG
CAACGACAACAGAGACAAAGGAAAGGGGCCCCCCCCAAGCCCCCCCCCCA
ACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no212_o06.b1 MSMg01no212_o06.b1 CHROMAT_FILE:
MSMg01no212_o06.b1 PHD_FILE: MSMg01no212_o06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:47 2005
         (314 letters)



>mm_chr3_147728823_147729536
          Length = 714

 Score =  584 bits (302), Expect = e-171
 Identities = 305/306 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatttgaattggaacaaaaataatttgatggatgctattaggttaattaaatatt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 gaattcatttgaattggaacaaaaataatttgatggatgctattaggttaattaaatatt 538

                                                                       
Query: 65  ttattttctttatgtttatttattatacatcagaaaagcagtgatctcagacacaatgta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 ttattttctttatgtttatttattatacatcagaaaagcagtgatctcagacacaatgta 478

                                                                       
Query: 125 tctttggtaattacaggggagactataggttagtgtccttaatttgttcacatgaaaagt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 tctttggtaattacaggggagactataggttagtgtccttaatttgttcacatgaaaagt 418

                                                                       
Query: 185 agattatacattcaagccatttcaaaacaattgccatggttgtacaaataaaaacatttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 agattatacattcaagccatttcaaaacaattgccatggttgtacaaataaaaacatttt 358

                                                                       
Query: 245 gtatacaaactttggtttttattgcataactttcataaataggagccagaaagaaatgtt 304
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 357 gtatacaaactttggtttttattgcataactttcataaatagcagccagaaagaaatgtt 298

                 
Query: 305 ttgctt 310
           ||||||
Sbjct: 297 ttgctt 292


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)