Query= MSMg01no213_f07.b1 MSMg01no213_f07.b1 CHROMAT_FILE:
MSMg01no213_f07.b1 PHD_FILE: MSMg01no213_f07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:19 2005
(324 letters)
>mm_chr3_41532947_41533672
Length = 726
Score = 545 bits (282), Expect = e-159
Identities = 312/324 (96%), Gaps = 6/324 (1%)
Strand = Plus / Plus
Query: 5 gaattcagcagaaa-tgtcgacttgctactcctaaaactaaaaattacatgactcacaca 63
|||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagcagaaacttttgacttgctactcctaaaactaaaaattacatgactcacaca 264
Query: 64 aaaaagccttttgttgccttt---aattgcccatcagaaggaaaaaaagatatttttgtg 120
|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaaaagccttttgttg--ttttttaattgcccatcagaaggaaaaaaagatatttttgtg 322
Query: 121 gttggcttaagcttaaagggcaaaagactataaaaaatatatcatgaagaatgggaaata 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 323 gttggcttaagcttaaagggcaaaagactataaaagatatatcatgaagaatgggaaata 382
Query: 181 aattaagaattgtcttatgccagagccaaacagagaattttcaacagaggaatcttgaat 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 383 aattaagaattgtcttatgccagagccaaacagagatttttcaacagaggaatcttgaat 442
Query: 241 ggctgacaaacacttaaagaaatgttcaaagtcctttgtcatcagggaaatgcaaatcca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ggctgacaaacacttaaagaaatgttcaaagtcctttgtcatcagggaaatgcaaatcca 502
Query: 301 aacaaccctgaggttccatcttac 324
||||||||||| |||||||||||
Sbjct: 503 aacaaccctgacattccatcttac 526
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 726
Length adjustment: 9
Effective length of query: 315
Effective length of database: 717
Effective search space: 225855
Effective search space used: 225855
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no213_f07.g1 MSMg01no213_f07.g1 CHROMAT_FILE:
MSMg01no213_f07.g1 PHD_FILE: MSMg01no213_f07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:20 2005
(289 letters)
>mm_chr3_41664694_41665381
Length = 688
Score = 528 bits (273), Expect = e-154
Identities = 285/289 (98%), Gaps = 1/289 (0%)
Strand = Plus / Minus
Query: 1 ctctcagtattcttcactgtcaggctttgcaattttatttattcttgctagaatgcactc 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ctctctgtattcttcactgtcaggctttgcaattttatttattcttgctagaatgcactc 429
Query: 61 actattgtagttatgacacttttcactctaagtcccccttttcaaggccttagaagaggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 actattgtagttatgacacttttcactctaagtcccccttttcaaggccttagaagaggg 369
Query: 121 gtaaaaaacaggtctttagctagaaatttctcatccttgttgacagtttggaaatgattt 180
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 gtaaaaaa-aagtctttagctagaaatttctcatccttgttgacagtttggaaatgattt 310
Query: 181 attttagaggagagcagaggtgagaagagcagaaaggaagatcatttatttcagcgtttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 attttagaggagagcagaggtgagaagagcagaaaggaagatcatttatttcagcgtttc 250
Query: 241 tgagaacttatctatcagttaatctcaggtttattgataaatgaaatgt 289
|||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tgagaacttagctatcagttaatctcaggtttattgataaatgaaatgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 688
Length adjustment: 9
Effective length of query: 280
Effective length of database: 679
Effective search space: 190120
Effective search space used: 190120
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
