BAC Information

Click to search

BAC

Clone NameMSMg01-213F13
Chromosome3 (Build37)
Map Location 3,059,763 - 3,060,125
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC667655, LOC100039140, Hnf4g, EG383815, LOC100039157, LOC100039167
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-213F13.T7 (MSMg01no213_f13.b1)MSMg01-213F13.TJ (MSMg01no213_f13.g1)
ACCAG394372AG394373
length734732
length of high quality
(start - end)
358 (377 - 734)662 (71 - 732)
definitionCHROMAT_FILE: MSMg01no213_f13.b1 PHD_FILE: MSMg01no213_f13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:21 2005CHROMAT_FILE: MSMg01no213_f13.g1 PHD_FILE: MSMg01no213_f13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:21 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TTGACATTCCCGTGGATCACTGTGATGCCACAGTGTAGCACATGACAACA
CAGTGAGCACTGTGACACCACAGTGGTGCCCTGTGACACTACAGTTGAGA
ACTGGGACGCCACACACACACATATGAACATTTTAACGTACATATATATA
TATATATATATATATATATATATATATATATATATATATATGCACACACA
CACACAAACACACACACACACACACACACACACACACACACACACATTGG
AAGACACAAAGTTCCAACATGATCCTACATGAAGTTTATACACATACATA
TATACATACATATAGTTGATGGGCGCAAAGTACATGTTCTAACCACTTAG
TTCTTTCTCCCATCACTCATGTATTTCAGAATAACGTTCCAGGAACTAAA
ATAATTTGTTTTAGGTCTCTTTCGTGAATTACTATGAAAAAAAACAATAC
GTTTCCAATTACTTCACAAGAAAATTTTACATAGTACAGGTTCCCAATAC
AAAAATACTAGATATAGCTTAACCAATTGTAAGGTAGCAAGATGATCTTT
CAGCAAATTTCTCTTATTGGCAAGCAGAAATCTGTAGTTACAAAAATAGA
CACAATTGTTTTATTATACTGTTTTTCTTCTTTTTTAAAATTAAAATGTT
TTATTTATTTACATTACAAATACTGCCTCAGTTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAAACGGTTCCCAGGACTCAATGGGGATAAC
AGTAGATGAAATACAGGGGAGATGGAACCTGAAGAGACTACATCTAGTAG
ATGGACATGGCACTCAGTTGAGTGATGGGGGCACCCACCCATCTTAAAAA
ATATACTGAGAATTGTCTCTGTCTAAAGGAAATTTAGGGACAAAAATGGA
ACAGGCTGAAGGAAGGGCCATCCAGAGAATATACCACTGTATTCTATCTA
CAGACTCCAAACCCCATCACTACTGCTGATACCAATATATACTTACAGAC
AGGAGCCTTATATGGCTGTCCTATGAGAGCCTCTGCCAGCAACTGACTAA
GGCTAATGGAGAAACTCACAGCAACCATTGGACTGAGTGTGGGGACCCCA
ATGGAAGAGTTAGGAGTAGGGCTGAAGGACCTGAAGGGGATGGCAACCAC
ACAGGAAAAACAACAGTATCATTTAACCAGATTCCTCAGAGCTCCCAGGG
ACTAAACTAACACCCAAAGTGTATACATGGGCGGGTTCATGGCTCCCAAT
ACTTATGTAGCAGAGAACTACCATCAGTGCAAGAGGTGGCACTTGGTCAT
GTGGAGGCTTGATGCCCCAGAAAAGGCAGATACTAGAGTGATTAGGTGGG
AGTGGCTGGATGAGGAGGGGGCAAAGGGGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no213_f13.b1 MSMg01no213_f13.b1 CHROMAT_FILE:
MSMg01no213_f13.b1 PHD_FILE: MSMg01no213_f13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:21 2005
         (358 letters)



>mm_chr3_3059568_3060324
          Length = 757

 Score =  371 bits (192), Expect = e-107
 Identities = 320/370 (86%), Gaps = 23/370 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaagtacatgttctaaccacttagttctttctcccatcactcatgtatttcagaataacg 60
           ||||||||||||||| ||| ||| ||||||||||||||||| ||||  | ||||| ||| 
Sbjct: 196 aaagtacatgttcta-ccatttaattctttctcccatcacttatgtcgtccagaaaaacc 254

                                                                       
Query: 61  ttccaggaactaaaataatttgttttaggtctctt-tcgtgaattactatgaaaaaaaac 119
           || ||||||||||||| ||||||||||| |||||| || |||||||||||||||||||  
Sbjct: 255 tttcaggaactaaaatgatttgttttagttctcttctcatgaattactatgaaaaaaag- 313

                                                                       
Query: 120 aatacgtttccaattacttcacaagaaaattttacatagtacaggttc------c---ca 170
             || ||||||||||||||||||||||||| ||||  ||||||||| |      |   ||
Sbjct: 314 --tatgtttccaattacttcacaagaaaatattacccagtacaggtacagaaaacaaaca 371

                                                                       
Query: 171 atacaaaaatactagatatagcttaaccaattgtaaggtagcaagatgatctttcagcaa 230
           | ||||||| ||||||||||| ||||||||||||||||||||||| | |||||| || ||
Sbjct: 372 a-acaaaaaaactagatatagattaaccaattgtaaggtagcaaggtaatctttaaggaa 430

                                                                       
Query: 231 a-tttctcttattggcaagcagaaatctgtagttacaaaaatagacacaattgttttatt 289
           | ||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 431 aattt-tcttattggcaggcagaaatctgtagtta-aaaaatagacacaattgttttatt 488

                                                                       
Query: 290 atactgtttttcttctttttta-aaattaaa--atgtt--ttatttatttacattacaaa 344
           |||||||||||||||||||||  ||||||||  || ||  ||||||||||||||||||||
Sbjct: 489 atactgtttttcttcttttttttaaattaaattattttatttatttatttacattacaaa 548

                     
Query: 345 tactgcctca 354
           ||||||||||
Sbjct: 549 tactgcctca 558


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 358
Length of database: 757
Length adjustment: 9
Effective length of query: 349
Effective length of database: 748
Effective search space:   261052
Effective search space used:   261052
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)