Query= MSMg01no213_m12.b1 MSMg01no213_m12.b1 CHROMAT_FILE:
MSMg01no213_m12.b1 PHD_FILE: MSMg01no213_m12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:54 2005
(313 letters)
>mm_chr3_106629862_106630578
Length = 717
Score = 578 bits (299), Expect = e-169
Identities = 308/313 (98%), Gaps = 4/313 (1%)
Strand = Plus / Minus
Query: 5 gaattctgtgctaaaaccatctggtcctgggtttgcttttgttagatgaattttaatttc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 gaattctgtgctaaaaccatctggtcctgggtttgcttttgttagatgaattttaatttc 522
Query: 65 tgctcaatatataaggaatatacctcaacatgaagcatgtattcatatcctctttgaatt 124
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 521 tgctcaatatataaggaatatacctcaacatgaagcatgtatccatatcctctttgaatt 462
Query: 125 attagattaagttcatgattgctactttgaaatcattgtcttatatgtcatctaaattgc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 attagattaagttcatgattgctactttgaaatcattgtcttatatgtcatctaaattgc 402
Query: 185 ----ttttttttttggaagactttacaatgagagtaccaatgtttggttgagacttgttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ttttttttttttttggaagactttacaatgagagtaccaatgtttggttgagacttgttt 342
Query: 241 ttattatttatatttgtgtatttatacctaatcatctggagttagattgttttgcttctt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ttattatttatatttgtgtatttatacctaatcatctggagttagattgttttgcttctt 282
Query: 301 ggtataaaaattg 313
|||||||||||||
Sbjct: 281 ggtataaaaattg 269
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 717
Length adjustment: 9
Effective length of query: 304
Effective length of database: 708
Effective search space: 215232
Effective search space used: 215232
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no213_m12.g1 MSMg01no213_m12.g1 CHROMAT_FILE:
MSMg01no213_m12.g1 PHD_FILE: MSMg01no213_m12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:54 2005
(188 letters)
>mm_chr3_106489053_106489640
Length = 588
Score = 364 bits (188), Expect = e-105
Identities = 188/188 (100%)
Strand = Plus / Plus
Query: 1 gtgtatatgcactgtcaggtatagtttattccactgaagtagaatgcaaagttattacta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtgtatatgcactgtcaggtatagtttattccactgaagtagaatgcaaagttattacta 260
Query: 61 agagcttaggagagggataaaaggtaattgcccactgataaatgttgtggatagataaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agagcttaggagagggataaaaggtaattgcccactgataaatgttgtggatagataaaa 320
Query: 121 atgtatagtcaataaaaaccatgtgttggccaggcgtggtggtgcacacctttaatccca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgtatagtcaataaaaaccatgtgttggccaggcgtggtggtgcacacctttaatccca 380
Query: 181 gtacttgg 188
||||||||
Sbjct: 381 gtacttgg 388
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 188
Length of database: 588
Length adjustment: 8
Effective length of query: 180
Effective length of database: 580
Effective search space: 104400
Effective search space used: 104400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
