BAC Information

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BAC

Clone NameMSMg01-214A09
Chromosome3 (Build37)
Map Location 125,802,308 - 125,824,127
singlet/doubletdoublet
Overlap genenone
Upstream geneNdst4, Ugt8a
Downstream geneArsj, Camk2d, Ank2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-214A09.T7 (MSMg01no214_a09.b1)MSMg01-214A09.TJ (MSMg01no214_a09.g1)
ACCAG394820AG394821
length708731
length of high quality
(start - end)		362 (46 - 407)571 (77 - 647)
definitionCHROMAT_FILE: MSMg01no214_a09.b1 PHD_FILE: MSMg01no214_a09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:13 2005CHROMAT_FILE: MSMg01no214_a09.g1 PHD_FILE: MSMg01no214_a09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,823,769 - 125,824,127)(125,802,308 - 125,802,878)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACCAAAGTTACTGTAGCAGAAGAGAAGATTAAGACACTACAGACT
TCTAAGCCAAGTCATGTGGACAGGATAATGTGGACTCACAAGAAGTAATG
ACACATTATCTACTTTTGGTGTTTATCATATATTTCTCCCAGTTGCAACT
CTGTGCTCTCTAATCAATATCTTACCATTGTCAGGACCCCATCTCTGGAA
GCTAGCACTCTACTCTGCAATCTTTATCTTTGGGTTATATTTTAAGGCTG
AAGAGTTTCTATGTGAACCTTCTACTGTAGGCCAAAGTAGTCTCTATGCT
TTGTTGAAATATTTTTACTTCAAATGCACATGAGTTTCCCACTATAAGCT
ATTCTATTACATCTACCAACAAAATGTCTACTTTTCTCAAAAAAAAAATT
AAACAATTTTTAAAATTTAAACTTTTAAAAAACCCAAAAAAAAAATTTTT
CTCACGGGGCGGGAAATTTTTTGTGGGGGAAAAAAAAAAAAAACGCTTTT
TTTTTTTCTTTGTGGGACCGGAACAACACTATAATAGAAACAGCCNCACC
CCCNNATCATTNNTTTTTTGTTTTTTTTGGTTGGGCTCCCGGGCGGGGCC
GTCACGTGGCNGCATAAATGTNNNGGGGCGTAGAGCTCGATAAGAGGAGA
GGTGTTGN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACAGCTCCATGGTGAGATGTTATG
TTTTATGCTTTACCCAAAGCTCTTCTTTTGCTCCTTATTTCTCTAAGGGC
TGGCTTCCCTGCTTTTGCTCACGTCTGAGAAGTAAAAATATGATCCTTAC
CATAGCTGTTTTGGGCTAGAGACCTAGACACATACACTTCTCAGAAGGAG
AAATCTTTTGAACATTTGGTTGAATTAGATAATTTTTACAAGTCTCAAGC
AAACATTTTTGTTCTTATTTCTTACGATGGAAAACAATTAATTTCAATAT
TTAAAAGTAATAGTAATTATTCCCCTTTTCACTTTTATTGCTACTCTTTG
GAAGCAGGCTTCTCAGGGCTAACCTGCCCCCCACACAGAGGCCAGGGCAT
TCTCATGGGCCAGAGATGTCACCCAAGACCATTCTGGGAGCATGGCAAAA
TGAAATCAAGATAAAATGTTGGAGCCAGCTAGAAATCTGGGCATTCTAAA
ACGCANAATATACGAAATGTATACAAAGCTGCTGTTGATTTCGTTATTTT
TTGAAGATAATTGTCTTTCTATTTATGCTTGCAGCATCACCCAAGAAGCT
GTGGTAGTTGATTTTCTCTCATCCTTTTGGCATTAAACCTAAGCAGGAAC
AGTGTATCAGCATAGTCATAGCAGTCTCATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no214_a09.b1 MSMg01no214_a09.b1 CHROMAT_FILE:
MSMg01no214_a09.b1 PHD_FILE: MSMg01no214_a09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:40:13 2005
         (362 letters)



>mm_chr3_125823566_125824327
          Length = 762

 Score =  687 bits (355), Expect = 0.0
 Identities = 358/359 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaccaaagttactgtagcagaagagaagattaagacactacagacttctaagcc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ggaattcaccaaagttactgtagcagaagagaagattaagacactacagacttctaagcc 503

                                                                       
Query: 64  aagtcatgtggacaggataatgtggactcacaagaagtaatgacacattatctacttttg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 aagtcatgtggacaggataatgtggactcacaagaagtaatgacacattatctacttttg 443

                                                                       
Query: 124 gtgtttatcatatatttctcccagttgcaactctgtgctctctaatcaatatcttaccat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gtgtttatcatatatttctcccagttgcaactctgtgctctctaatcaatatcttaccat 383

                                                                       
Query: 184 tgtcaggaccccatctctggaagctagcactctactctgcaatctttatctttgggttat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tgtcaggaccccatctctggaagctagcactctactctgcaatctttatctttgggttat 323

                                                                       
Query: 244 attttaaggctgaagagtttctatgtgaaccttctactgtaggccaaagtagtctctatg 303
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 322 attttaaggctgaagagtttctatgtgaaccttctactgtaggccaaactagtctctatg 263

                                                                      
Query: 304 ctttgttgaaatatttttacttcaaatgcacatgagtttcccactataagctattctat 362
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ctttgttgaaatatttttacttcaaatgcacatgagtttcccactataagctattctat 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 762
Length adjustment: 9
Effective length of query: 353
Effective length of database: 753
Effective search space:   265809
Effective search space used:   265809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no214_a09.g1 MSMg01no214_a09.g1 CHROMAT_FILE:
MSMg01no214_a09.g1 PHD_FILE: MSMg01no214_a09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:40:13 2005
         (571 letters)



>mm_chr3_125802108_125803078
          Length = 971

 Score = 1098 bits (568), Expect = 0.0
 Identities = 570/571 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagctccatggtgagatgttatgttttatgctttacccaaagctcttcttttgctcctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acagctccatggtgagatgttatgttttatgctttacccaaagctcttcttttgctcctt 260

                                                                       
Query: 61  atttctctaagggctggcttccctgcttttgctcacgtctgagaagtaaaaatatgatcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttctctaagggctggcttccctgcttttgctcacgtctgagaagtaaaaatatgatcc 320

                                                                       
Query: 121 ttaccatagctgttttgggctagagacctagacacatacacttctcagaaggagaaatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaccatagctgttttgggctagagacctagacacatacacttctcagaaggagaaatct 380

                                                                       
Query: 181 tttgaacatttggttgaattagataatttttacaagtctcaagcaaacatttttgttctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttgaacatttggttgaattagataatttttacaagtctcaagcaaacatttttgttctt 440

                                                                       
Query: 241 atttcttacgatggaaaacaattaatttcaatatttaaaagtaatagtaattattcccct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttcttacgatggaaaacaattaatttcaatatttaaaagtaatagtaattattcccct 500

                                                                       
Query: 301 tttcacttttattgctactctttggaagcaggcttctcagggctaacctgccccccacac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttcacttttattgctactctttggaagcaggcttctcagggctaacctgccccccacac 560

                                                                       
Query: 361 agaggccagggcattctcatgggccagagatgtcacccaagaccattctgggagcatggc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agaggccagggcattctcatgggccagagatgtcacccaagaccattctgggagcatggc 620

                                                                       
Query: 421 aaaatgaaatcaagataaaatgttggagccagctagaaatctgggcattctaaaacgcan 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 621 aaaatgaaatcaagataaaatgttggagccagctagaaatctgggcattctaaaacgcaa 680

                                                                       
Query: 481 aatatacgaaatgtatacaaagctgctgttgatttcgttattttttgaagataattgtct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aatatacgaaatgtatacaaagctgctgttgatttcgttattttttgaagataattgtct 740

                                          
Query: 541 ttctatttatgcttgcagcatcacccaagaa 571
           |||||||||||||||||||||||||||||||
Sbjct: 741 ttctatttatgcttgcagcatcacccaagaa 771


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space:   539121
Effective search space used:   539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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