CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGA
ATTCTATTAAGATATCCNGAAAGCAGGGGATGAAACAACAGTAAAATGAG
GTGAATCCTCATTTGTTATAAACCCGAAATCTAAAGTGGGCAACTAAGAA
GTGGTGGTATAAGCAAATAGCACAGGTAAGATCCAGAAAATCAGTCAAAA
ATGTTAAAAACTTGTTTGTCCAAAGAGGCAGATCTAATATTAAAAAGGCA
TAAGCGAGGAGATGATTGGTTTTCTTTTTAATTTATTGTTGGATAGACTG
CTTTAATAAAAACAGACTTATAATTTTAAAATGTTGTAAAATGAGCATAA
GAACGGTCTAGTCAATATTTGTTGAAAGCATTGTTTTACTCCAGATTATA
TATGAAAATCAGAAAATGGAAATCAAAATTTTATTTGAAAACTTGTAACT
TCTTTATGATAATAAAAAAATCAATTTTGCTTTGTATTTGTACACCATCA
GAGTTTGGTCACATTCCCAACCTACTACTTTCATTTCACAGAAAGCTACT
AAAGGGAAGCATGCTGGCTTTTGCCAATCCATTATATCCCTCATGTATCC
ATCTGACCTTTACCAACCTGTAAATCAGTGAACCCAGAGACTTTACTCAT
GACCCCACACAGCCTGAGGACAGCTCTAGTAAAATCTAAGCCTTTATTAG
AGGTGAGAACATCAACACTGTCACTGACCTCCCAGGGC

TAATAAAAAGATTGTGAGGTTTGTGTTCTTTGCTAAATATTTTTTGTNNN
NNTATAAGCGATGCTAATGGGGAAGCCGTGGGGGCCGGCCGGGCCGCCCA
ACATTATGTGGGGCCAATATAAAGGGAACCCGGGGAATTCCCTTGGAAAG
GTGGGAGCACGCTTATCCCCACTTTATTTGTGGGCCCACGTAAAGGACCG
GTGTATAAGGAAAAAAAAAAAAAACTTTATTAGAACCTCCTTGTGTGGGG
CCCCCCAGAAAAAAGAAACAAAATACTCCCCCCCAGGGAGGAGAAGAAAG
CGCATACCCCCCCCCAGGCGGTTTAAAAGCGGAAAATAATTCCAGCTCAC
GGGTGGGGGGTCCGCCCCCTATAAACCCACAGAGAAAGGATACCTCTGAG
TGAAACAAAACCCCAACCCTGGGGGCTTTGTGTGAGATCAGCCCAGAAAA
AATAAAACCCCTAACCCAAACTTATTTTTTCCCCCACCCCCCCCCTCCCC
CTTTTACAAAATTCCTAAAATGGAAAAAGGGGGGACATTTCCCCCCCGAA
ACCGGGGAAATTTAAAAAAAAAATCCGAATATTTCTACCAAAAGCCCTAT
TTCTCCACCAAAAATGGGGAAAACCAAAATGGAAATTGGGGGGAGGTTTC
TAGGACGGAGATTCCTATATCCCCAGGTTTTATTTGAGGGGCGGAAATAA
CCTTTCTTAANCGGGTTCCCTAATCCCCCTTTTGGAAATAAAAAAAAAGG
CCTTTTAAAAATCTCCCCACCCCCAAAAAAAGCCCGGGGGCCCAAAATGG
GTTTTATTGGGGAAAATTTTTTCCCAACCCCTCCTAAAAAGAAAAACCAA
CCCTTTCCCGAATCTTTTTCCCTTAAAATTGAAAGGGAAAGGGAACACCT
TCCCCACATTATTTTTTTN

Query= MSMg01no214_m03.b1 MSMg01no214_m03.b1 CHROMAT_FILE:
MSMg01no214_m03.b1 PHD_FILE: MSMg01no214_m03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:41:11 2005
         (538 letters)



>mm_chr3_136726853_136727790
          Length = 938

 Score =  920 bits (476), Expect = 0.0
 Identities = 523/540 (96%), Gaps = 4/540 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaaagcaggggatgaaacaacagtaaaatgaggtgaatcctcatttgttataaacccgaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||| | ||||  |||
Sbjct: 738 gaaagcaggggatgaaacaacagtaaaatgaggtgaatcctcatttgtcaaaaacaagaa 679

                                                                       
Query: 61  atctaaagtgggcaactaagaagtggtggtataagcaaatagcacaggtaagatccagaa 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 atctaaagtggccaactaagaagtggtggtataagcaaatagcacaggtaagatccagaa 619

                                                                       
Query: 121 aatcagtcaaaaatgttaaaaacttgtttgtccaaagaggcagatctaatattaaaaagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 aatcagtcaaaaatgttaaaaacttgtttgtccaaagaggcagatctaatattaaaaagg 559

                                                                       
Query: 181 cataagcgaggagatgattggttttctttttaatttattgttggatagactgctttaata 240
            |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tataagcaagaagatgattggttttctttttaatttattgttggatagactgctttaata 499

                                                                       
Query: 241 aaaacagactt--ataattttaaaatgttgtaaaatgagcataagaacggtctagtcaat 298
           |||||| ||||  | |||||  |||||||||||||||||||||||||| |||||||||||
Sbjct: 498 aaaacatacttaaaaaattt--aaatgttgtaaaatgagcataagaactgtctagtcaat 441

                                                                       
Query: 299 atttgttgaaagcattgttttactccagattatatatgaaaatcagaaaatggaaatcaa 358
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 atttgtggaaagcattgttttactccagattatatatgaaaatcagaaaatggaaatcaa 381

                                                                       
Query: 359 aattttatttgaaaacttgtaacttctttatgataataaaaaaatcaattttgctttgta 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aattttatttgaaaacttgtaacttctttatgataataaaaaaatcaattttgctttgta 321

                                                                       
Query: 419 tttgtacaccatcagagtttggtcacattcccaacctactactttcatttcacagaaagc 478
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tttgtacaccatcagagtttgatcacattcccaacctactactttcatttcacagaaagc 261

                                                                       
Query: 479 tactaaagggaagcatgctggcttttgccaatccattatatccctcatgtatccatctga 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tactaaagggaagcatgctggcttttgccaatccattatatccctcatgtatccatctga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space:   489984
Effective search space used:   489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)