TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATGAAATTCTTAGGCAAATGGATGGATCTGGAGGATATCATCCTG
AGTGAGGTAATCCAATCACAAAAGAACACACATGATATGCACTCACTGAT
AAGTGCATATTAGCCCAGAAACTGGAATATCCAAAATACAATTTGCAAAT
CACATGAAACTCAAGAAGAAGGAAGACCAAACTGGATACTTCCATCCTTC
TTAGACGGGGGAACAAAATATGCATGGAAGAAGATACAGAGACAAGGTGT
GGAACAGAGACTGAAGGAATGACCATCCATAGACTGCCACATCTGGGGAT
CCATTCCATTTACAACCACCAAACCCAGACACTATTTTGGATGTCAACAA
GAACTTGCTTGCAAGAGTCTGATACAGCTGTCTCCTGTGAGGCTCTGCCA
GTGCCTGAAAAATACAGAAGTGGATGCTTGCAGCCATTCATTGGATGGAT
CAGATTCCCTAATGAAGGAGCTAGAGAAAGAACCTAAGTTGCTGAAGGAG
TTAGCCGTCCCATCAGAGGAACAACAATATGAACTAACCAGTACCCCCCA
GAGCTCCCTGGGACTAAACCACCAACCAAAGAAAACACATGGTTGGACTC
ATGGCTCTAACTGCATATGTAGCAGAGGATGGCCTAGTCAGTCATCAATG
TGAGGAGAGCCCCTTGGTCCTG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTCTGGTCAAGGGAAGTGGTCAGA
GTATCACTGAAAGTACCATTGAAACTGGTCAGAGAACACAGAAGAAGCAG
AAAAGCATTAGATTAGAGTCAGATCAAGGACCTGTGGCTTGCATTGCACA
GCATATGGAGCCTGTGGCCAATAAAGCTGGAGATAAGTCTAGAGGGGGCA
ACTTGTGAACTTAATGTATAGGATGTGTGAAATCATTAGAGAATTGAGTG
TGGGGAGAGATTCATTGCTGTGTTGAGTCCACAGGTCCTACATGATAACT
GAGTACAGTGCACTGAGTTTAGGCCTGCTCTCGAAATAGTGCCGTCTGCA
AATAGCGATGAGAACAAAATAACAAGTAACCATAGCAACGATCACAGGGC
CTGGAGTAAGAATTAAATGACTTAACATCTAATACATACTCAGCAATATC
TAACAGAGTGTAAGCACTCAGGAATTGTTGTCAATCATTACTGCCATCGT
GACTTCTAATTCCTTAATTTAGTTTAAAAATATTTAATCATTTTCTGTGT
GTATGGCCATGGGGGTGTGTTCAAGCTTGTATCTGAATGTCTGTGCACCG
GACTGTAGATCTGAAGCTCAGAGGAAGACCTCAGCCACATCCTACACTGC
TTCACACCTTAGCCCTCAATAGAGATCCAA

Query= MSMg01no216_a04.g1 MSMg01no216_a04.g1 CHROMAT_FILE:
MSMg01no216_a04.g1 PHD_FILE: MSMg01no216_a04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:42:49 2005
         (485 letters)



>mm_chr3_25559065_25559949
          Length = 885

 Score =  886 bits (458), Expect = 0.0
 Identities = 479/486 (98%), Gaps = 2/486 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   attctggtcaagggaagtggtcagagtatcactgaaagtaccattgaaactggtcagaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 attctggtcaagggaagtggtcagagtatcactgaaagtaccattgaaactggtcagaga 626

                                                                       
Query: 61  acacagaagaagcagaaaagcattagattagagtcagatcaaggacctgtggcttgcatt 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 acacagaaggagcagaaaagcattagattagagtcagatcaaggacctgtggcttgcatt 566

                                                                       
Query: 121 gcacagcatatggagcctgtggccaataaagctggagataagtctagagggggcaacttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gcacagcatatggagcctgtggccaataaagctggagataagtctagagggggcaacttg 506

                                                                       
Query: 181 tgaacttaatgtataggatgtgtgaaatcattagagaattgagtgtggggagagattcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgaacttaatgtataggatgtgtgaaatcattagagaattgagtgtggggagagattcat 446

                                                                       
Query: 241 tgctgtgttgagtccacaggtcctacatgataactgagtacagtgcactgagtttaggcc 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 445 tgctgtgttgagtccacaggtcctacatgataactgagtacagtgcactgagtttaagcc 386

                                                                       
Query: 301 tgctctcgaaatagtgccgtctgcaaatagcgatgagaacaaaataacaagtaaccatag 360
           |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgctcttgaaatagtgccgtcttcaaatagcgatgagaacaaaataacaagtaaccatag 326

                                                                       
Query: 361 caacgatcacagggcctggagtaagaattaaatgacttaacatctaatacatactcagca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caacgatcacagggcctggagtaagaattaaatgacttaacatctaatacatactcagca 266

                                                                       
Query: 421 atatctaacagagtgtaagcactcaggaattgttgtcaatcattactgccat-cgtgact 479
           |||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||
Sbjct: 265 atatctaacagagtgtaagcactcaggaattgttgtcaatcattactgccatac-taact 207

                 
Query: 480 tctaat 485
           ||||||
Sbjct: 206 tctaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space:   415625
Effective search space used:   415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)