BAC Information

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BAC

Clone NameMSMg01-216I18
Chromosome3 (Build37)
Map Location 5,776,736 - 5,776,972
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC620283, Zfhx4, Pxmp3, EG620382, EG667759
Downstream geneLOC100041165, LOC100041193, EG620570, LOC100041214, LOC383818, 1700008P02Rik, LOC100039349, Olfr289-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-216I18.T7 (MSMg01no216_i18.b1)MSMg01-216I18.TJ (MSMg01no216_i18.g1)
ACCAG396381AG396382
length697728
length of high quality
(start - end)		315 (46 - 360)239 (128 - 366)
definitionCHROMAT_FILE: MSMg01no216_i18.b1 PHD_FILE: MSMg01no216_i18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:43:35 2005CHROMAT_FILE: MSMg01no216_i18.g1 PHD_FILE: MSMg01no216_i18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:43:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTTCTTTATGTCCTCTACCATCATCATGAGATATGCTTTTAAATC
CAGGTCTACCTTTTCAGGTGTGTTAGGGTGTCCTGGATTGGGCGAAGTGG
GCGTTCTGGGTTCTGATGATGGTGAGTGGTCCTGGCTTCTGTTAGTAGGA
TTCTTACGTTTACCTTTCGCCATCTGGCAATCTCTGGAGTTAGTTGTTAT
AGTTGTCTTTGTTAAAAGATTGTTCCTCTGTTGATTTTGTTACCCTCTAT
CAGCAGGCGTGGGAGACTATTCTCTCTTCTCTGAGTTTCAGTGGTCAGAG
CAGTCTCTGTTTTTTTGCTCCCCTCTCCCACCCAAGGTGTACAGTTATCT
GGTGTTTGGACCTCCTCCCCCCCCAAAATGAAAGCCCAAAACAGGATCTT
TCCCAGAAGCTGTGTTGCTTTGGCCAGGAAGGTGGCCAGTTGTCTGGAGT
CGAAGATGTCGCAGCCTCAGAAGCTCTGTGGCTCTTGCCGGGAAGTTGTC
TGGTTGTCTGTTGCTGAGGATGTTGCCGCCCCAGAATTCTTGAGATTCTC
TTGCCTGTCCCAGAATTATATGTTACTTTGTTTTCTATACGGTCTTCCTT
GTTATTTTGCCTTCCAAGGTTTTCAGTACTCTTCATTGTTCCTTCTG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACACAGAGGCGGAAAGTATGAACT
AACACAAACTGTCCTCTGATTCACACACACACACACACACACACACACAC
ACACACACACACACACACACACATGCCTGTACACACAGGCTTGAGTCTCA
CACGCACAAGCACACAATAAATAATAAATGAATGAATACATAATCCTCAC
ATAATGAAAGTAGAAAAATAGTAAAAAAATAAAAAAAGATAGTAAAGTTC
AACAAAAGTTTATCATCAGTTTTTTGGTTTGGTTTGGATTGGTTTGGCTT
GGTTTGTTGTTGTATCTGTTTAGCAAAACCCCACTATATATATATATATA
TATATATATATATATATATGCACCCACACACATATATATATATATATATA
GAGAGGCACATATATATCACTATATCGCTATATATATATAAACATCAACT
AACCGATTTATATTTTATCTTCCACACCCTCTAACATATATATATATATT
TTTATTATAACCATATTATACACATTATTTATTAATACACACAAAACCAT
AATACCTTATATCCCGCAGTGTTTTTCCAAATCATCAAACATTACACATA
TTTCACCCACATGCACATTACGTGTTTTGTCTTGTTATAGTGAACTGCTG
AGTAGTTGTAATGTAGTCATTATGTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no216_i18.g1 MSMg01no216_i18.g1 CHROMAT_FILE:
MSMg01no216_i18.g1 PHD_FILE: MSMg01no216_i18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:43:35 2005
         (239 letters)



>mm_chr3_5776532_5777170
          Length = 639

 Score =  443 bits (229), Expect = e-129
 Identities = 235/237 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacacacacacacacacacacacacacacacacacacacacacacatgcctgtacacaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cacacacacacacacacacacacacacacacacacacacacacacatgcctgtacacaca 382

                                                                       
Query: 61  ggcttgagtctcacacgcacaagcacacaataaataataaatgaatgaatacataatcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggcttgagtctcacacgcacaagcacacaataaataataaatgaatgaatacataatcct 322

                                                                       
Query: 121 cacataatgaaagtagaaaaatagtaaaaaaataaaaaaagatagtaaagttcaacaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacataatgaaagtagaaaaatagtaaaaaaataaaaaaagatagtaaagttcaacaaaa 262

                                                                    
Query: 181 gtttatcatcagttttttggtttggtttggattggtttggcttggtttgttgttgta 237
           |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 261 gtttatcatcagttttttggtttggtttggtttggtttggcttgatttgttgttgta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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