BAC Information

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BAC

Clone NameMSMg01-217M10
Chromosome3 (Build37)
Map Location 60,615,964 - 60,616,196
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC669780, EG666803, C130079G13Rik, LOC676914, Aadacl2, Aadac, Sucnr1, LOC669823, LOC100040485, Mbnl1, LOC676933
Downstream geneLOC100040501, EG666853, P2ry1, Rap2b, LOC666891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-217M10.T7 (MSMg01no217_m10.b1)MSMg01-217M10.TJ (MSMg01no217_m10.g1)
ACCAG397186AG397187
length1,274711
length of high quality
(start - end)
336 (491 - 826)233 (128 - 360)
definitionCHROMAT_FILE: MSMg01no217_m10.b1 PHD_FILE: MSMg01no217_m10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:32 2005CHROMAT_FILE: MSMg01no217_m10.g1 PHD_FILE: MSMg01no217_m10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGGATCTATGGGCCTATAGACTCCTAAGGGAGAGGATCCGCGGAATTCAC
TACAATCTGACTTCTCCATATCTAATACAAATCAGTTAATCAGCCTTTGT
AATCAGATCCTCTTTCTAGGAACTCTCCTTGGCCTCATATTATAATCACA
ACAGCATCGCTCTGCTTTCTGTCATGAATCACATTTCTTTTTCAATAAAC
TCACTAGCAAAACAAGTTATTACTGGTTAAAATATTTTGGTTCAATTTTA
CATAGCAAATACTTCATTCATAGATTTTGTTAATCATTTCCTCTAAACAA
ACTGAAATAAAGATCGAATCAACATGCGTATTTTAATCAAAACACACCTG
TATTTTAAAAACTGCCCTGCATCAAAGTGCAGAGAGTGAAAAACTAGGGT
GTCTTTCTCACATCACTCTGCTCAAGGCTCAGAGACCTATGGGAAGAGGA
TTTTTTTCCCCCCCCCCATCCAGAGGTGGAAGATGTCTAAAAAAAAATTG
TCATACAGGTAAAACAGGGGTGATACACTTATAAGTGCACAGAGACTGTA
ATAGCACATAAAGACTGTACAATCTCAAGCCAGAGAAGACCCCAGGGCCA
AGAAGAGGTAATGGGAACAAAGCCCCAGGATTAATCAACCAAGAAGCTAT
TTGTATTTGACACCTGCTGGCAGAGGAAAAAAAAAGTGATATTCTTTAAT
GGAAGTATGCTGTGCATATCAATAACACTCCAGAACTGGCTTCATGCTCA
GGCTAACGCAAAGGTACTCTATGTATTTATTGTTGTTGTTGTTTTTGTTT
GCTTGTTTCTGTTTCATTTCATTTTGGAATTTTTGTCTTTTTGTTTGATT
GTTTTGTATGTTCTTGTTTGGAGAGATGGAAAAGAAGAAGGATTTAGCAA
TTCTACTTTTTCTTCTTTTATCTACCTCTATTCCATCTCTAAAATTCTCT
TTATTCTTCCTATCTTTTTTTTATACTTTCTCATTCTTACTATCTTTCCA
TTCTTCACTTCTTATCCTTCTTTTCTTTTTACCCAACTTTTAACTTCCCC
ATCCTCATTTCTTCATCTACCTAACTCTTATCATATTACTCTTATCTTTC
TTTATTTTCTTACCTTTTTCTCCTATTTATATTACCTTCGCTTACCTTTT
CATTACCTACTTTCTTCCCTTTCTATCTTTATTCCTTCTACTTATCCTAT
TATACCTCCAATTCTGTCTCCATGCATTCTATCATTTTAATATATATTCT
TTTATTCTCCTTATATTCATTCTA
CAATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTTTTCACACTAATGCTATCCTACAAA
CACATGCACAGTTAATTTGCCACCAGATATCTGCCTGTCTAAACTTTCAA
TGATGACCCAGGAAGTTAATGGGGAAACTCTTTTCCCTGTAATTCGCATG
TTAATGTCACAGCATTTTGTTCTGGTTTCACAGCTGTGCTCAAAGAATCC
GGGTCTCACGTGACTCTGGTTACACCGGAATTCCCCAGTTCCAAATGCCA
GAATGGCGGACTTTCCTGATATGTCAAAGCTGAGATAAGTGGAACTGGCT
AATTAGTCATTTTTCTTAGGCCCCCCCCCTGTCTCTGAGGCTGTTGACTG
TTTGCAGGTCTTGAGGGTTTGCATCATTATATTGGCAATGTGGCAGTTAT
GGCAATGAGATATAAATGGTGAGAAATTAGCATTATAAATTAATTCAGAG
AAACCTTGAATCTGTCTGATTTATGACAGGTTGGTTCCTAATAATTTAAT
TTGTTTCTTGATACCTGTTTGGAAGGCATCAGATACCTGAGCCTATATTA
AAAAAATTCTACAATAGCCTAAATAATTCTGCATTGCTAATTAATATCTC
TTAGAAAATCTTGCTTCATAGTTCCTCTTTAACCCTGTTTACCACATGTA
ATAATTCCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no217_m10.g1 MSMg01no217_m10.g1 CHROMAT_FILE:
MSMg01no217_m10.g1 PHD_FILE: MSMg01no217_m10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:45:32 2005
         (233 letters)



>mm_chr3_60615764_60616396
          Length = 633

 Score =  443 bits (229), Expect = e-129
 Identities = 232/233 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatctgcctgtctaaactttcaatgatgacccaggaagttaatggggaaactcttttccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tatctgcctgtctaaactttcaatgatgacccaggaagttaatggggaaactcttttccc 374

                                                                       
Query: 61  tgtaattcgcatgttaatgtcacagcattttgttctggtttcacagctgtgctcaaagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tgtaattcgcatgttaatgtcacagcattttgttctggtttcacagctgtgctcaaagaa 314

                                                                       
Query: 121 tccgggtctcacgtgactctggttacaccggaattccccagttccaaatgccagaatggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tccgggtctcacgtgactctggttacaccggaattccccagttccaaatgccagaatggc 254

                                                                
Query: 181 ggactttcctgatatgtcaaagctgagataagtggaactggctaattagtcat 233
           |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggactttcctgaaatgtcaaagctgagataagtggaactggctaattagtcat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space:   139776
Effective search space used:   139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)