BAC Information

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BAC

Clone NameMSMg01-218C04
Chromosome3 (Build37)
Map Location 3,516,880 - 3,517,199
singlet/doubletsinglet
Overlap geneHnf4g
Upstream geneLOC667655, LOC100039140
Downstream geneEG383815, LOC100039157, LOC100039167, LOC667709
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-218C04.T7 (MSMg01no218_c04.b1)MSMg01-218C04.TJ (MSMg01no218_c04.g1)
ACCAG397416AG397417
length763767
length of high quality
(start - end)
324 (44 - 367)289 (72 - 360)
definitionCHROMAT_FILE: MSMg01no218_c04.b1 PHD_FILE: MSMg01no218_c04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:04 2005CHROMAT_FILE: MSMg01no218_c04.g1 PHD_FILE: MSMg01no218_c04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTTGAGAAAATTAATGGGCTTCTCACCAGGATTTTGTAGCACTTTT
GTACTAGTGAACACTTATGTGCATCTTGGTGAATAGTAATTATCTTAAGT
GTATTCACTTCAGACATGATCAACTTAAAATACAGCAATAGCTTATTCCA
CAGTGTAAAAGGCAGTGCTTTAAAATAAGGCTCTCCATACATGACTACTG
TGATTACTGTGCCCCTTCCTTCCTCATTATGGTTTCATAGTCAGTTAGTA
AATACATACTCCAGAAGTTATCCCAAAGCGTAGGCATTCCTAATGACAGT
CCCTAACATCGGAGACTTTATTATTCCTCCCCTCATCATCCAACATTCAA
TCTCCATGCAAGATGAAGTTAAAAATTATCAGACCAGAGAAAGAATAAGT
TGCAATGAAAATGACATGCAGGGCAAGAGCTTGACAAACATTTCAAGAAA
GGTACAGAAGACTTGCAAACTAAGTGGAGACTGGCTTGGATGAAAGAGGC
AGGTAACAACAGTGGTGGCTTATTCAGAGTGCTCTAACTAGAAATGTCAC
GTCTGATGGCCCATATATAACATAGTGAATTTGAGGAACTAAACAAATTA
TTCCACCTCAACTAAACTAAGAGGATTGACCTGTAATGGTAAAAAGTCAC
AATATGAGGGGTTCAATGATGGAAGGCCTGTGTTTTCTATAAGCACATTA
GGAAATTAACTCA
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTGGAAAGATAATGTGTGAATTTGTTTTT
GCCATGGAATACTTTGGTTTCTCCATCTATGGTAATTGAGAGTTTAGCGT
GGGCTGGCATTTGTGTTCTCTTAATGTCTGTATAACATCTGTTCAGGATC
TTCTAGCTTTCATAGTCTCTGGTGAAAAGTCTGGTGTAATTCTGATAAGT
CTGCCTTTATATGTTACTTGACCTTTTTCCCTTACTGCTTTTAATATTCT
ATCTTTATTTAGTGCATTTGTTTTTCTGATTATTATGTGTAGGGAGGAAT
TTCTTTTCTGTTTTTTTTCTATCCCCGAGCTACCCCGTTTCTTGTATGTT
CATGGGCATCTCTTTCTTTAGGTTTGGAAAGAAAATCTTCTATAATTTTG
TTGAAGATATTTGCTGGCCCTTTAAGTTGAAAATCTTCATTCTCATCTAC
TCCTATTATACCAAGGTTTAGTCTTCTCTTTGTGTCCTGCATTCCCTGGA
TGTTTTGGAGTTACGATATTTTTTGCATTTTGTTTTTTCCTTTGACTGTT
TTTGCTGGATGATTCCCTATTGCAAATCTTTCCTGCCCCTTGAAAACTCC
TCTCTTTCCATTCTTCTTGAAATTTCAGTTTGCCTAAATGCCTTCACCTT
TTTAATTTATTTCTCAGCAATTTTCTTTTCCCCCAAGGTGTTCTTCCTCC
CTCCTCCCAGGTGGCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no218_c04.b1 MSMg01no218_c04.b1 CHROMAT_FILE:
MSMg01no218_c04.b1 PHD_FILE: MSMg01no218_c04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:04 2005
         (324 letters)



>mm_chr3_3516676_3517400
          Length = 725

 Score =  596 bits (308), Expect = e-175
 Identities = 317/320 (99%), Gaps = 1/320 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttttgagaaaa-ttaatgggcttctcaccaggattttgtagcacttttgtacta 63
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 gaattcttttgagaaaagttaatgggcttctcaccaggattttgtagcacttttgtacta 465

                                                                       
Query: 64  gtgaacacttatgtgcatcttggtgaatagtaattatcttaagtgtattcacttcagaca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 gtgaacacttatgtgcatcttggtgaatagtaattatcttaagtgtattcacttcagaca 405

                                                                       
Query: 124 tgatcaacttaaaatacagcaatagcttattccacagtgtaaaaggcagtgctttaaaat 183
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 tgatcaacttaaaagacagcaatagcttattccacagtgtaaaaggcagtgctttaaaat 345

                                                                       
Query: 184 aaggctctccatacatgactactgtgattactgtgccccttccttcctcattatggtttc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 aaggctctccatacatgactactgtgattactgtgccccttccttcctcattatggtttc 285

                                                                       
Query: 244 atagtcagttagtaaatacatactccagaagttatcccaaagcgtaggcattcctaatga 303
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 284 atagtcagttagtaaatacatactcctgaagttatcccaaagcgtaggcattcctaatga 225

                               
Query: 304 cagtccctaacatcggagac 323
           ||||||||||||||||||||
Sbjct: 224 cagtccctaacatcggagac 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 725
Length adjustment: 9
Effective length of query: 315
Effective length of database: 716
Effective search space:   225540
Effective search space used:   225540
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)