Query= MSMg01no218_d19.b1 MSMg01no218_d19.b1 CHROMAT_FILE:
MSMg01no218_d19.b1 PHD_FILE: MSMg01no218_d19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:11 2005
(331 letters)
>mm_chr3_36122384_36123114
Length = 731
Score = 586 bits (303), Expect = e-172
Identities = 315/321 (98%), Gaps = 4/321 (1%)
Strand = Plus / Plus
Query: 5 gaattctcttgtgcttactccactggcccagtttctcctccactgaaatgtttctacatg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaattctcttgtgcttactccactggcccagtttctcctccactgaaatgtttctacatg 260
Query: 65 atttgcccattttctaattgaactattcactttatatgtgtttaggggctcatttaggtt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttgcccattttctaattgaactattcactttatatgtgtttaggggctcatttaggtt 320
Query: 125 atacactcaagttctttttcaaggaggtaatttgcaagtaattttcttacagtttgcagc 184
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atacactcaagttctttatcaaggaggtaatttgcaagtaattttcttacagtttgcagc 380
Query: 185 tcagttgttttttttttt----aaaccagccccagaatatattttaaatgttgattgcgt 240
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcagttgtttttttttttttttaaaccagccccagaatatattttaaatgttgattgcgt 440
Query: 241 tgactttgcattaaattctgtagttcataactagccattatttttgttctttgctttctt 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 441 tgactttgcattaaattctgtagttcataactagccattaattttgttctttgctttctt 500
Query: 301 actgatgaatttttagctttg 321
|||||||||||||||||||||
Sbjct: 501 actgatgaatttttagctttg 521
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 731
Length adjustment: 9
Effective length of query: 322
Effective length of database: 722
Effective search space: 232484
Effective search space used: 232484
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no218_d19.g1 MSMg01no218_d19.g1 CHROMAT_FILE:
MSMg01no218_d19.g1 PHD_FILE: MSMg01no218_d19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:11 2005
(234 letters)
>mm_chr3_36193767_36194400
Length = 634
Score = 418 bits (216), Expect = e-121
Identities = 228/232 (98%)
Strand = Plus / Minus
Query: 1 atactgggatcataaacacgggcaacctgcctcgctgtccctttccctttgatagcaaat 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 432 atactgggatcataaacacgggcaacctgcctcgctgtccctttccctttgatatcaaat 373
Query: 61 gtgctactggttgcggcatttgtggttttgtctatagctgtgaggtatcggcataggtct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 gtgctactggttgcggcatttgtggttttgtctatagctgtgaggtatcggcataggtct 313
Query: 121 atgtcagaactatgaaagaactgggtggcttccagaatggatacagcaatggcaaccact 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 atgtctgaactatgaaagaactgggtggcttccagaatggatacagcaatggcaaccact 253
Query: 181 gcagggaaaggtctgcctctgtggagagggaggagcctgctaccatgtgagg 232
||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 252 gcagggaaaggtctgcccctgtggagagggaggagcctgctgccatgtgagg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space: 140625
Effective search space used: 140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
