BAC Information

Click to search

BAC

Clone NameMSMg01-218E11
Chromosome3 (Build37)
Map Location 73,733,760 - 73,734,047
singlet/doubletsinglet
Overlap genenone
Upstream gene2010204N08Rik, Slitrk3, Bche
Downstream geneLOC667425, LOC619764, LOC667434, LOC100041551, EG667459
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-218E11.T7 (MSMg01no218_e11.b1)MSMg01-218E11.TJ (MSMg01no218_e11.g1)
ACCAG397506AG397507
length770766
length of high quality
(start - end)
319 (46 - 364)289 (72 - 360)
definitionCHROMAT_FILE: MSMg01no218_e11.b1 PHD_FILE: MSMg01no218_e11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:14 2005CHROMAT_FILE: MSMg01no218_e11.g1 PHD_FILE: MSMg01no218_e11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTTGCTATGAAGAGACATTGTGACAACATCAATTTTTATAAAGA
AAAATATTTAATTGAGGCTATCTTATAGTTCAAATGTTTAGCCCATTATC
ATCATGGAGGGAAACAATGCAGCATGCAAGAAAACATAGTGTTAGGGAAG
TGGCTGAGAGTTCTAACTCTGGATCTCTAGGCCTCCCATGACTTGAGCAT
CAGAGACCTCAATGCCCATCCACTAGTGGCATAACACCTCCAAAAATGGC
ATACCTATTCCAAGACCAAAACTCCTAATAGTGCCACTCCCTATGTGCCT
ATGCCAATTAATTCTTCTCAGCACCACGCCCCTGCATGTCTGTGCAATAT
CTATCAATAGAGATAGAGATGAGATAGATAGATAGATAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGATGCTNTNTTCTTGTTTCCTTCCTTTATA
GTGTTCTCCGCCCCCCCTTTTTATTATTCGTTTCCTTGCACTTTCATTTT
TTCATTTTTTGTATTCTTTTATTTTACTCGCTCTTTCTCCTCCACCGCGT
TCTTTGGTTTTATATCACTTCTTTCTTTTCCTCTTTCCTTCCCCTCCCTT
ATCTTCTATATTACTTTAATCTTATTCTCTCTTTTTTTATCGCCCAATTC
CCCATCTCACTATCCCTTTTCATTGTTTTTTATTCTTTATTTACCTTCCT
CCCTACTCCCTCCACCTTCN
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTCTGGGCATCTGCTGCTTGTGTTTACTC
ACACAATGCAAAGTGCAAAACAAAAATTCACCTACTTTAAGAGTGTACTG
ATCACAAACACTGCAAAGGTCAATAGAAAAATATTTAGAAAGTTTTCCTT
TCATATATAGTCTCCCCTTTCAACTCCAAGTCAGGGATTATTCACACCTA
TCTTAATCAGGAAATTTGTGTTTTTATTTGATAAAAATAAACACTAATAA
TTATTTTCTTTGGAAAAAATCACATCATGTAGGATTAAGATATAGTCAAA
TAATTTTCCAGTTAATGCATTCCCNAGCTACCCCCCAAGTTCCCTTAATT
AAGAAAAATAATAACACCAGTAATAATAATATAAAATTCAAAATTTTATT
TTCCAGCATGTACTTTCTACAACTAGTCATTTCTAAATTCAAAAAATTTA
CACATAAAATATTAATATTGAAATCAGATAACATACATTACAAAATATAA
TGATTAATATTTTGTTCAGAGCTTCTTCAAGCATTGATTTCCTTATATAA
TCTTCATAAAAGCTTCTTTAGAAAAACAGCCACTGGTCCTTCCTTCTATC
TTCCAACATGCTGCTATCAATCCTTTTTGGCATCCTTCCAGCCCCTAGTA
TTCTCTATTGAATTTTCATCTCACATTTTGTTTACATCACTTCTTCTGAC
TCTTATTAAATTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no218_e11.g1 MSMg01no218_e11.g1 CHROMAT_FILE:
MSMg01no218_e11.g1 PHD_FILE: MSMg01no218_e11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:15 2005
         (289 letters)



>mm_chr3_73733560_73734248
          Length = 689

 Score =  549 bits (284), Expect = e-161
 Identities = 287/288 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctctgggcatctgctgcttgtgtttactcacacaatgcaaagtgcaaaacaaaaattcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctctgggcatctgctgcttgtgtttactcacacaatgcaaagtgcaaaacaaaaattcac 260

                                                                       
Query: 61  ctactttaagagtgtactgatcacaaacactgcaaaggtcaatagaaaaatatttagaaa 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctactttaagagtgtactgaccacaaacactgcaaaggtcaatagaaaaatatttagaaa 320

                                                                       
Query: 121 gttttcctttcatatatagtctcccctttcaactccaagtcagggattattcacacctat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttttcctttcatatatagtctcccctttcaactccaagtcagggattattcacacctat 380

                                                                       
Query: 181 cttaatcaggaaatttgtgtttttatttgataaaaataaacactaataattattttcttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttaatcaggaaatttgtgtttttatttgataaaaataaacactaataattattttcttt 440

                                                           
Query: 241 ggaaaaaatcacatcatgtaggattaagatatagtcaaataattttcc 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaaaaaatcacatcatgtaggattaagatatagtcaaataattttcc 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)