BAC Information

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BAC

Clone NameMSMg01-218J13
Chromosome3 (Build37)
Map Location 65,594,439 - 65,594,706
singlet/doubletsinglet
Overlap genenone
Upstream gene4933425M15Rik, LOC670110, Kcnab1, Ssr3, EG433604, EG667093, LOC100041083, 4931440P22Rik, Tiparp, LOC545530, LOC100040978, EG624866
Downstream geneCcnl1, LOC625048, Veph1, Tpi-rs2, Ptx3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-218J13.T7 (MSMg01no218_j13.b1)MSMg01-218J13.TJ (MSMg01no218_j13.g1)
ACCAG397709AG397710
length723722
length of high quality
(start - end)
273 (44 - 316)289 (75 - 363)
definitionCHROMAT_FILE: MSMg01no218_j13.b1 PHD_FILE: MSMg01no218_j13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:39 2005CHROMAT_FILE: MSMg01no218_j13.g1 PHD_FILE: MSMg01no218_j13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCCTCCTCCCACAACACCCTTCTCCTTTGTACTTTGGCTTTGTCAGT
AATTTTTTTTTCTTCTCAAGCCCTTAAAAGACCTGTAGATAGCTTAATAG
ACATCATCTCCAACCACTCAGTCCAGAAAAGAGAACCTTCCTTTTAGCTT
TGAAGTCCCCTTGTGCTTCTCCACAGGCCCATCCAGTCTTCTCTTCTGCT
GTGGTAATCATCCCAGCAATCTCGGATAAAAAGGACCACCCTCAAATTGA
TAAAGAACATTTTCTAATCCTCTAACCTGTTATGCCCCTGCTTTTCTGTA
ATTTTTATTTTTTTTATGCCCNTACCCCTCCCGATGCTAGACTTTCCACA
TGATTTATCTTGATCCACCCACACTCACAGGGCTTGGGATACAGAGTAGG
GAACAGCTCTGCCTTAGCATGTGTGGAATCCTGGGTTTGATGCCCAGTGC
GCACCCTGAACTCCTACTGTATGCATTGTTCTGTGGCTTTGCCTTTGTGC
TCAGTGTCCAGTTGCAGAGATTTGAGCACAGTGTGTAAAGGGCCTTCTGA
TTCCTGAACTCTCTACCTGAAAGTCACCACATTGTGGCAGTCTGTTTTCG
AATTTCCTCCCAGCTTTTTGACTTATGCATGAAATATCACTTCTTGTTTC
ATTTCCAAAGGATATCCCAAATG
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCCTCTGAAGAAACAGACTGGGAGGA
AGAAGCAGCTCATTATGAGAAAAAAGGGTACCAGCCAGGTAAAGTGCTAG
CTAATCAGTTAAGGAAGCCAAAAGCGGCTGGCGAAGGCCAGTTTGCTGAT
TGGCCTCAGGGCAGTCGGCTTCAAGGTCCGCCCTATGCGGAGTCCCCGCC
CTGCGTAGTGCGTCAGCCCTGCGCAGAGAGACAATGCGCAGAGAGGCAAT
GCGCAGACTCATTCATTCCCAGATTGTAACAAAGGAAAATACAACAGGCA
TTTCCAGTCTTTTAAGTAGCTTACCCNGGCCGNGTCCACGTTCCGGTAGA
ATACGTACAGATTAAAGAACCCCCCCAGACAAAAAAAAAATACGGAACCG
AGGCTAATTTTACCTTGCTGCAGTTAGACAGGCTCGCCGGCATGGCACTA
ACTCCTGCCGACTGGCAAACGGTTGTAAAAGCCGCTCTCCCTAGTATGGG
CAAATATATGGAATGGAGAGCGCTTTGGCATGAATCTGCTCAAGCGCAGG
CCCGAGCAAACGCCGTTGCTTTGACTCCATAGCAGAGAGATTGGACTTTT
GACTTGTTAACGGGCCAGGGAACTTAATTCTGCTGATCAAACAAACTTCC
CTTGGGTTAGCTTAATGCCCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no218_j13.b1 MSMg01no218_j13.b1 CHROMAT_FILE:
MSMg01no218_j13.b1 PHD_FILE: MSMg01no218_j13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:39 2005
         (273 letters)



>mm_chr3_65594234_65594906
          Length = 673

 Score =  480 bits (248), Expect = e-140
 Identities = 263/268 (98%)
 Strand = Plus / Plus

                                                                       
Query: 6   aattctcctcctcccacaacacccttctcctttgtactttggctttgtcagtaatttttt 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 aattctcctcctcccacaacacccttctcctttgtactttggctttgtcagtaatttttt 265

                                                                       
Query: 66  tttcttctcaagcccttaaaagacctgtagatagcttaatagacatcatctccaaccact 125
           ||||||||||||  |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 266 tttcttctcaagttcttaaaagacctgtagatagcttaatagacatcatccccaaccact 325

                                                                       
Query: 126 cagtccagaaaagagaaccttccttttagctttgaagtccccttgtgcttctccacaggc 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 cagtccagaaaagagaaccttccttttagctttgaagtccccttgtgcttctccacaggc 385

                                                                       
Query: 186 ccatccagtcttctcttctgctgtggtaatcatcccagcaatctcggataaaaaggacca 245
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 386 ccatccagtcttctcttctgctgtggtaatcatcccagcaatctcagataaaaaggacca 445

                                       
Query: 246 ccctcaaattgataaagaacattttcta 273
           ||||| ||||||||||||||||||||||
Sbjct: 446 ccctcgaattgataaagaacattttcta 473


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 673
Length adjustment: 9
Effective length of query: 264
Effective length of database: 664
Effective search space:   175296
Effective search space used:   175296
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)