BAC Information

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BAC

Clone NameMSMg01-218L03
Chromosome3 (Build37)
Map Location 15,193,811 - 15,193,971
singlet/doubletsinglet
Overlap genenone
Upstream geneEG622229, LOC668062, Slc7a12, LOC668068, Lrrcc1, E2f5, 1810022K09Rik, LOC100039929, Car13, EG545507, Car1, LOC100041785, Car3, Car2, EG634323, LOC100039985
Downstream geneLOC751864, Sirpb1, LOC668101, LOC100038947, LOC622425, LOC664795, LOC381484, Ythdf3, LOC100040034
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-218L03.T7 (MSMg01no218_l03.b1)MSMg01-218L03.TJ (MSMg01no218_l03.g1)
ACCAG397775AG397776
length683764
length of high quality
(start - end)
129 (108 - 236)161 (72 - 232)
definitionCHROMAT_FILE: MSMg01no218_l03.b1 PHD_FILE: MSMg01no218_l03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:47 2005CHROMAT_FILE: MSMg01no218_l03.g1 PHD_FILE: MSMg01no218_l03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATAATTTGCNNCCGCTATACAACTCCTATANNNACACATCCCCCNAATT
CTTCCTCTGATTCAAANCTACTANAANCTGNCTCCTTGANCTCATCTAAN
GATGAATATAGGCTCCTTCTCCTACANACCTCCGCTAATTGANCTTTTTT
CTTTTTCTTTTTTCTTTCCCTTCCTTCTATTCTCTCCCCCNNTATTCTTA
CCTGATCTAAACTTTTCCTCCCCTTCTCTACCCCNCCNCCNGGCCNGNCN
ACCTTATCTCTTTTTTCCCCTCTCTTCCCCCCTTTNCNNTCCCTCCTCCT
TCCCCTCTCCCCNCCTCTTTCCCTTCCTCCCCCCCATCTGCCCCCCTTCT
TTTTTTTCCACTTCCCCCTACTTCCCTCCCCCCCCCTTTCCCTTTTTNTA
CCCCACCAAAAGGGAATTATTTTTTCGNTTTTNNNTTTTTTCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCNCTTNNTTACAATTTTAACTGTTT
TTTATTGGGGGGCCTGGTTTCTTTTCTTCCCACTTTCCCTCTCTCTCCCC
CCTTCTCTCTTCCCTTTTCCTTCTTTCTCCCCTTTCTTCCCCCTTCCCTT
TTTTCTCCCTCCNCCATCAAACCTTTTTCCCTACTCTCACCCATATTTTA
TTATATTTACATATTTATATGGTGTGTGAGTTG
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAAAGCAGAAAAGGATATTATATAAAAAT
GATAAAGGATGAAATGAACAGAATACTAATGTAATTCATATTGGTTTATT
AATGAATAAAAGAACAAAGGTATGTGCATCTATAGAAATTAAAACAAAGC
AGAGAAGGAGAAAGAGAGAGATAGAAACAGAGACTGAGAGACAGAGAGAA
GAAAAGAAACAAAAATAATAGTTCAGTTCATAAAACTAAACAATTCCTGG
AAATTCCATGAAAATAAAATTTGAAATTTCAGTAATTTGAGAACCTGAAT
TTCTCCTACAAAATTATTTTTATTGCCCCCCGCGTCCCCCGCTAGATTCT
CTCTGTGAAATCTATATAAAATACCCCCATCCTTAAAACTATGGTACAGT
GCCTTAGCTGGTGTCCACGACACACGCTGAGGCCTTGTCTTTATTATCAA
TAGGGTCTGCAAATATTGTCTTTGCCATGGTTGAATATAGCCCCATCTAT
GCCGATAACCTTGTCGACTACCCTAGTACGCTATTACCCCAGACAGGTTA
AATAATCTTCCCCCACTCTTCCGTCTTTTCTCTCTCTTTTCCCCTCTTTT
CCCCCTTTTCCTCTTCATCATATTTTTTAATCCTCTTTTCCCCACTTTTT
CGTTACTTCTCCCCTCTTCCCCCCTTTCTTTCCACCCTTTTCCCTTCCCT
TTATCCTCAATTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no218_l03.g1 MSMg01no218_l03.g1 CHROMAT_FILE:
MSMg01no218_l03.g1 PHD_FILE: MSMg01no218_l03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:47 2005
         (161 letters)



>mm_chr3_15193611_15194171
          Length = 561

 Score =  311 bits (161), Expect = 1e-89
 Identities = 161/161 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaagcagaaaaggatattatataaaaatgataaaggatgaaatgaacagaatactaatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 caaagcagaaaaggatattatataaaaatgataaaggatgaaatgaacagaatactaatg 302

                                                                       
Query: 61  taattcatattggtttattaatgaataaaagaacaaaggtatgtgcatctatagaaatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 taattcatattggtttattaatgaataaaagaacaaaggtatgtgcatctatagaaatta 242

                                                    
Query: 121 aaacaaagcagagaaggagaaagagagagatagaaacagag 161
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aaacaaagcagagaaggagaaagagagagatagaaacagag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 161
Length of database: 561
Length adjustment: 8
Effective length of query: 153
Effective length of database: 553
Effective search space:    84609
Effective search space used:    84609
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)