BAC Information

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BAC

Clone NameMSMg01-231J04
Chromosome3 (Build37)
Map Location 121,347,895 - 121,501,967
singlet/doubletdoublet
Overlap gene4930432M17Rik, F3, Abcd3
Upstream gene2510027J23Rik, LOC435752, Tmem56, LOC668778, LOC668780, Alg14, Ppia-ps3_1234.1, Cnn3, Slc44a3, A730020M07Rik
Downstream geneLOC100043298, Arhgap29, Abca4, EG668788, LOC626807, LOC100043724, Gclm, Ppia-ps3_1245.1, Dnttip2, LOC675117, LOC100043726, Bcar3, Fnbp1l, Ppia-ps3_2252.1, Pde5a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-231J04.T7 (MSMg01no231_j04.b1)MSMg01-231J04.TJ (MSMg01no231_j04.g1)
ACCAG398348AG398349
length797728
length of high quality
(start - end)		318 (46 - 363)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no231_j04.b1 PHD_FILE: MSMg01no231_j04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:54 2005CHROMAT_FILE: MSMg01no231_j04.g1 PHD_FILE: MSMg01no231_j04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,347,895 - 121,348,200)(121,501,678 - 121,501,967)
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAGTCCAGCGTATATGAGAGTCTCCCCAAATCCCACCTTCCAGTT
ACTGCCAACTTAGCTTATTTCAGAGAGAGACCAAAGGCCCCCATAGGTAG
CTCCTCGCTAATTCTCAGCGCCATTTAGAATCCATTGGCACATGCATCAT
TCATTGCTTCTGCTTCTGCACTTGTACAATTCACCACTGAAACCCTTCAG
TGTAAGCTCCTCGTTTGTAGAATTCTGAAGGTGGCTCCACAGAGGCCCTT
CCTGATGACCTCTTGACTTTGTTCTGCCACCTCCCTCTCCCTCCCCCTCT
CCCTCCCCCTCTTTTTTTTCCCCCCCCCCCCCCCCCTNTNTTTTTTTTTA
TTTTTTTNTTTTTNNTTCCCCCCTCCAAAAAAAAAAAAAATACTTCACGT
CGGGGGGTGGAACATATTTCTTACACACACCACTATTTTCTAAATGTACC
ATTCTTCCTAATTACCACTTCTATCCAACTAATCATCTTTTCTGGCTCTC
GTTACTAACCTCCTTACCGTATTTCGTCCTACAACTCTATCGATAGCTTT
CTTTCTTTCTTCGCTTTTACGGTTATTTTATTCTCTTGTGCTTTCTTATC
TACCCTTGGCCAATAAAACCGAGCGACTTTCGTTAACCGCCCCATATTAC
ACTTATTGTGTTTGATCTTTTCGCGAATACACCTAATATATCGCTCACAC
TTACGCCGCTATTGTATTGATCCAGATGGTGGATTTTCCCTCCTTCG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTAGGACAGCTAGGGCTACACAAAG
AAACCTTGTCTTGAAACAAACCAACCAACCAACCAAACCCTTAAAAACCA
TTCTTTGACTTGGAGTTAGGTTTGTCTTTGTAGCTTTGCTTGGTCTTGTT
TGTCTTTATGCTGAAAATGAAATGTACAGATTGATTGAGCCCAGTGAGGC
ATTGACAGAAGAGGATTGCGTGTACATGGCCCCTGCGTATACATGACTTG
GAGACGCGCAACAAAGATGCCCCTTTTAAGAGAGTCTTACTGCCTTCCTC
CGAGCAATGTGCGTGCTTTCTATGTTTAGACTCTGCTTCAGACACATGAA
TCCCCAGGTCATGAGTTCACCACACCAGCATACATTTGGATAAGTGAGCA
ATGCAGAAGTATAAAGACATTTCAGTTCATCACACAGCATTCTTTACAAT
ACTTACTTAGAACCTAGCTTAGCTTTTTCTCTACTGCTGTGATAAAACAT
CTTAACCAAGACAACTTTGAACAAGTGTTCCAATGTCCAAAACTGTAGGG
AATGGTTGTCATTTAAACCACCACAGAACATCTATCTGATTAGCTGAGTG
TTAGATCTGGTTGAGTGCTGCCTAAACTTGCTTTCCCCCTTCTGTTCATG
GATGCAGAGTCCATATTCCAAGTATGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no231_j04.b1 MSMg01no231_j04.b1 CHROMAT_FILE:
MSMg01no231_j04.b1 PHD_FILE: MSMg01no231_j04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:54 2005
         (318 letters)



>mm_chr3_121347691_121348408
          Length = 718

 Score =  561 bits (290), Expect = e-164
 Identities = 302/306 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaagtccagcgtatatgagagtctccccaaatcccaccttccagttactgccaac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaagtccagcgtatatgagagtctccccaaatcccaccttccagttactgccaac 264

                                                                       
Query: 65  ttagcttatttcagagagagaccaaaggcccccataggtagctcctcgctaattctcagc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttagcttatttcagagagagaccaaaggcccccataggtagctcctcgctaattctcagc 324

                                                                       
Query: 125 gccatttagaatccattggcacatgcatcattcattgcttctgcttctgcacttgtacaa 184
            |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 325 accatttagaatccattggcacatgcatcattcattgcttctgtttctgcacttgtacaa 384

                                                                       
Query: 185 ttcaccactgaaacccttcagtgtaagctcctcgtttgtagaattctgaaggtggctcca 244
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttcaccacttaaacccttcagtgtaagctcctcgtttgtagaattctgaaggtggctcca 444

                                                                       
Query: 245 cagaggcccttcctgatgacctcttgactttgttctgccacctccctctccctccccctc 304
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 445 cagaggcccttcctgatgacctcttgactttgttctgccacctccctctccctctccctc 504

                 
Query: 305 tccctc 310
           ||||||
Sbjct: 505 tccctc 510


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no231_j04.g1 MSMg01no231_j04.g1 CHROMAT_FILE:
MSMg01no231_j04.g1 PHD_FILE: MSMg01no231_j04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:54 2005
         (291 letters)



>mm_chr3_121501430_121502120
          Length = 691

 Score =  561 bits (290), Expect = e-164
 Identities = 290/290 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   taggacagctagggctacacaaagaaaccttgtcttgaaacaaaccaaccaaccaaccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 taggacagctagggctacacaaagaaaccttgtcttgaaacaaaccaaccaaccaaccaa 479

                                                                       
Query: 61  acccttaaaaaccattctttgacttggagttaggtttgtctttgtagctttgcttggtct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 acccttaaaaaccattctttgacttggagttaggtttgtctttgtagctttgcttggtct 419

                                                                       
Query: 121 tgtttgtctttatgctgaaaatgaaatgtacagattgattgagcccagtgaggcattgac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tgtttgtctttatgctgaaaatgaaatgtacagattgattgagcccagtgaggcattgac 359

                                                                       
Query: 181 agaagaggattgcgtgtacatggcccctgcgtatacatgacttggagacgcgcaacaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 agaagaggattgcgtgtacatggcccctgcgtatacatgacttggagacgcgcaacaaag 299

                                                             
Query: 241 atgccccttttaagagagtcttactgccttcctccgagcaatgtgcgtgc 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 atgccccttttaagagagtcttactgccttcctccgagcaatgtgcgtgc 249


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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