BAC Information

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BAC

Clone NameMSMg01-231N22
Chromosome3 (Build37)
Map Location 90,086,692 - 90,087,006
singlet/doubletsinglet
Overlap genenone
Upstream geneEfna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3, LOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra, Atp8b2, LOC668102, Hax1, Ubap2l, 4933434E20Rik, 1700094D03Rik, Tpm3, Nup210l, Rps27, Rab13, Jtb, Creb3l4, LOC100042397, Slc39a1, Crtc2, Dennd4b
Downstream geneGatad2b, Slc27a3, Ints3, Npr1, LOC668141, Ilf2, Snapap, 2500003M10Rik, S100a1, S100a13, S100a14, S100a16, EG628324, S100a3, S100a4, S100a5, S100a6, S100a7a, S100a8, S100a9, LOC668165, LOC383949, Pglyrp4, LOC329706, EG545541, LOC635737, EG668174, LOC668179, LOC635756, 4930529C04Rik, 9130204L05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-231N22.T7 (MSMg01no231_n22.b1)MSMg01-231N22.TJ (MSMg01no231_n22.g1)
ACCAG398557AG398558
length724725
length of high quality
(start - end)
319 (45 - 363)288 (77 - 364)
definitionCHROMAT_FILE: MSMg01no231_n22.b1 PHD_FILE: MSMg01no231_n22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:15 2005CHROMAT_FILE: MSMg01no231_n22.g1 PHD_FILE: MSMg01no231_n22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGGAGTTTTCTTTGGAGGACTTTTAACTCCAGTACTTGGTGGTAGA
AGCAGTATTATCAAAAATTCAAGGCCATTTTGACCATGTTGCAAGTTTCA
GGCCAGCCTGGGTCCAGGAAAGAGTACTCTAGACCAGTAAGACTCTGTAC
TCTTCTAGGGGAGGGGCTGAGATCTAAAATTGTCTTGCTATAGTCCAGTG
CAGTACTAAGCATACTATAAACAGAAACTTACTTTAAGAGGACACATGAA
AACTGGAGATAGCCCGGCGTGGTGGCGCACACCTTTAATCCCAGCACTAG
GGAGGCAGAGGCTTTTTTTATTTCTGACCCCCCAGGCCAGCCTGATCTAC
AGTGTGAGTTCCAGGACAGCTACGGAAAACCTGTCTTGAAAAACAAAACA
AAGCAAAACAAAAAAAACAAAAAACAAAAAAACAAAAAAAAAAAAGAAAG
AAAGAAAGAAAAGAAAACTGGAGCTATAGTTCAGTGGTAGAGTATTTGCA
TAGTGTTCAGGAGGCCTCTGGGCTCGAACTCTACTATGGGGGAAAAAGTA
GAACAGCTGGGATGTAGCTCAGGTTTAGAATAGGGTGAAAATGTCTGTCT
AGTATATTTAAGATCCTAGAGCTGATCACCAGCAAAGTACAGACACACAC
ACACACACACACTCACACACACAC
TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTAGAAATAAGTTATTGTGTGCA
TTCATGTGGTGTGTGTGTTTGTGTGTGTGTGTGTTTGTGTGTACACATGG
TTACCATGGTTTGTGTGTGGCAGTCAGAGGACAACTTTGTAAGTTGGTTC
TCTCCTTCCACCTTCATGTGTGTTCCAGTGATTGAATCCATTCCAGGATT
TTGTGGCAAGGGCCCTTACCCACTGGGCTGACCTGATGACCCCTAGTTTT
TATGTCCTTTTATTATCCTGCAGATTCTTGTGTCCAGCTTAAGGGACTCA
GTCCTAGAACTGGTTTTNATTTGATCCNANGCGAGCACCTTTGATAATTT
CAGCTCACTGATGCTAGAATGCCCCCCATCACAAAAAAACACTAGCTCAT
TTTGAAGATTCTAAGTCAGTGGAGATGGTAGCCAGAGACGATGGCAGTGG
GCAGACCCGGCTGCACGGTACTGTAAACAGCTTGCAAATGCCACAGGGCG
TTACTAAATGGTTCACATTGCTTCCTTAAGAGCAACTGTCTCATTCTAAA
CTTTATTCATGTTGCCTTCATCTCTGATATTTATGCGTTTTTATAGAACA
ACACAGAGGTAAGATTGGCAATGTGGTTCAGTGATAGAGCCTGTTTCTAG
CTTATGTGGGATCTTGTGTTCTATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no231_n22.b1 MSMg01no231_n22.b1 CHROMAT_FILE:
MSMg01no231_n22.b1 PHD_FILE: MSMg01no231_n22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:15 2005
         (319 letters)



>mm_chr3_90086426_90087144
          Length = 719

 Score =  578 bits (299), Expect = e-169
 Identities = 311/315 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctggagttttctttggaggacttttaactccagtacttggtggtagaagcagta 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 ggaattctggagttttctttggaggacttttaactccagtacttggtggtagaagcagta 522

                                                                       
Query: 64  ttatcaaaaattcaaggccattttgaccatgttgcaagtttcaggccagcctgggtccag 123
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 ttatcaaaaattcaaggtcattttgaccatgttgcaagtttcaggccagcctgggtccag 462

                                                                       
Query: 124 gaaagagtactctagaccagtaagactctgtactcttctaggggaggggctgagatctaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 gaaagagtactctagaccagtaagactctgtactcttctaggggaggggctgagatctaa 402

                                                                       
Query: 184 aattgtcttgctatagtccagtgcagtactaagcatactataaacagaaacttactttaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 aattgtcttgctatagtccagtgcagtactaagcatactataaacagaaacttactttaa 342

                                                                       
Query: 244 gaggacacatgaaaactggagatagcccggcgtggtggcgcacacctttaatcccagcac 303
           |||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||
Sbjct: 341 gaggacacatgaaaactggagatagcccagagtggtggcgcacaccttaaatcccagcac 282

                          
Query: 304 tagggaggcagaggc 318
           |||||||||||||||
Sbjct: 281 tagggaggcagaggc 267


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)