BAC Information

Click to search

BAC

Clone NameMSMg01-232L17
Chromosome3 (Build37)
Map Location 84,722,535 - 84,722,862
singlet/doubletsinglet
Overlap genenone
Upstream geneD930015E06Rik, Mnd1, Trim2, EG624713, 6330505N24Rik, Arfip1, EG667788, EG627369, Tigd4, Tmem154, LOC624889
Downstream geneFbxw7, Dear1, LOC100042237, LOC100042125, Pet112l, 9930021J17Rik, Glt28d2, LOC100042265
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232L17.T7 (MSMg01no232_l17.b1)MSMg01-232L17.TJ (MSMg01no232_l17.g1)
ACCAG399146AG399147
length717714
length of high quality
(start - end)
245 (126 - 370)328 (387 - 714)
definitionCHROMAT_FILE: MSMg01no232_l17.b1 PHD_FILE: MSMg01no232_l17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:17 2005CHROMAT_FILE: MSMg01no232_l17.g1 PHD_FILE: MSMg01no232_l17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTAACGTGTCCGCGCTGCATAACAAGACTGCAAGACTAAAAGTAAA
GAGATCAAGACAGAGTTTATGGGCAGAAAAAGAGAGGGGGAAAGAAGGAA
GGAATGAACGAAAGAAGAATGAACAATGTAAGACATTTCTTTGTTTGCCA
GATGTGGCTGTTCTCATTAATCCTGTCCGAAGGAGCAGAGGCAGGAGGAT
TTCTGTGAGTTCAAGGCTACACTGATTTATACAGTGAGCTCTAGGACAGC
CTGGGCTAGAGAGTGAGACCCTGTCTCATACAAACGACTACAGAACCCCT
ACTTCTTGAATTTTTGTTGAACCCCACCCCGGTGATTACACTTTCAGATG
GAATTTCTGACTGGCTCCCCCCCCCTTTTATTAAGTGGCAGAATTCTTAA
GAATGGGAATGTGGGCCTGATTCCTTCTTAAGAGTGCCGGGCACTCTTAA
GCCGGGCAGTGGTGGTGCATGCCTTTAATCCTAGCACTTGGGAGGCACAG
GCAGGAAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCC
AGGACAGCCAGGGCTACACAGACCAAACATCTCTATATCATGCTACTGGG
TGGTGGTGACTTGCTTACACCAAGTTAGGTCTTCCTCCTCCTCCTCCTCC
CCTCCTTCTGTTAAGAT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATCCCCATGTGACGACAAAGAGC
CTCCAACAACTTCATCTTCCACAGCATTCAAAATAAACAATTAAAGTCTG
CCCTTTACTTTTATAAGCAAGTTTTAGCACAACTCACTCATCAACCTTTC
AGCTATTTCTCCTGCAAAAGTCTTACAAATCGTTTGCAGGCCAGGAAATC
ACACTACTCTGTGCTTCTGGGGACCCTGCAGGGAAGGATATGTGCGTACA
CACCTTTAAAATAAAAATAAAAAAAATTAAGTACAAAAAATATTTACTCT
AAATAAAATACTTTATTTTTACTATCCCCCCACCCAAAATAATTTAGACT
TTCATTCCTAGATAAACTGACACCCCCATAAATTTCAACATTAATTTTAT
AGCAGATGTCTGAGTTTTCATTTCTTCAATAAATAAAACACTAATTAGCT
ATCAAAAAAGATAAATTAACTCAACTTCTTTAATCCCAAATGTGCTTGTG
TAGGAAGATCTTGAGAGTTAAGAGGAAGTGAGTGAGAGGCTGTGGAGATA
GAGATATAAGGGTAAATGCTTGCTATGCAAACATGGGGACCTTGAATTCA
ACACCCAACTCCCATGCTTACACTTGCATGCTCAGTGGGCTCAAGCATCT
ACAATCCTAGTGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_l17.g1 MSMg01no232_l17.g1 CHROMAT_FILE:
MSMg01no232_l17.g1 PHD_FILE: MSMg01no232_l17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:17 2005
         (328 letters)



>mm_chr3_84722335_84723062
          Length = 728

 Score =  580 bits (300), Expect = e-170
 Identities = 321/328 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaataatttagactttcattcctagataaactgacacccccataaatttcaacattaatt 60
           ||||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||
Sbjct: 528 aaataatttagactttcattcctagataaactgacagtctcataaatttcaacattaatt 469

                                                                       
Query: 61  ttatagcagatgtctgagttttcatttcttcaataaataaaacactaattagctatcaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 ttatagcagatgtctgagttttcatttcttcaataaataaaacactaattagctatcaaa 409

                                                                       
Query: 121 aaagataaattaactcaacttctttaatcccaaatgtgcttgtgtaggaagatcttgaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 aaagataaattaactcaacttctttaatcccaaatgtgcttgtgtaggaagatcttgaga 349

                                                                       
Query: 181 gttaagaggaagtgagtgagaggctgtggagatagagatataagggtaaatgcttgctat 240
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 348 gttaagaggaagtgagtgagaggctgtggagatagagacataagggtaaatgcttgctat 289

                                                                       
Query: 241 gcaaacatggggaccttgaattcaacacccaactcccatgcttacacttgcatgctcagt 300
           | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 gtaaacatggggaccttgagttcaacacccaactcccatgcttacacttgcatgctcagt 229

                                       
Query: 301 gggctcaagcatctacaatcctagtgcc 328
           ||||||||||||||||||| ||||||||
Sbjct: 228 gggctcaagcatctacaatgctagtgcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space:   229361
Effective search space used:   229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)