BAC Information

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BAC

Clone NameMSMg01-232M15
Chromosome3 (Build37)
Map Location 6,114,752 - 6,115,114
singlet/doubletsinglet
Overlap genenone
Upstream geneZfhx4, Pxmp3, EG620382, EG667759, LOC100041165
Downstream geneLOC100041193, EG620570, LOC100041214, LOC383818, 1700008P02Rik, LOC100039349, Olfr289-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232M15.T7 (MSMg01no232_m15.b1)MSMg01-232M15.TJ (MSMg01no232_m15.g1)
ACCAG399187AG399188
length736740
length of high quality
(start - end)
313 (45 - 357)363 (378 - 740)
definitionCHROMAT_FILE: MSMg01no232_m15.b1 PHD_FILE: MSMg01no232_m15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:21 2005CHROMAT_FILE: MSMg01no232_m15.g1 PHD_FILE: MSMg01no232_m15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTT
CTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCT
ATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTT
TTGTCCTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATT
AGGTCCCATTTGTCAATTCTCGATCTTACAGAGCAAGCCATTGCTGTTCT
GTTCAGGAATCTTTCCCCTGTACCCATATCTTCAAGGCTTTTCCCCACTT
TCTCCTCTATAAGTTCCACCGCTCTCTGGTTTTATGTGAAGTTCCTTGAT
CCACTTAGATTCGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCA
TTCTTCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATG
CTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTG
ACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGT
CTACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAATTGCC
CTGTAGTAAAGCTTTAGGTCAGGCATGGTGATTCCACCAGAGGTTCTTTT
ATCCTTGAGAAGAGTTTTTGCTATCCTAGGTTTTTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCAGGATGAAGAAAGAGATCCCAG
AAATGAGACTCACTTAATTTAACCATTTCAGTCTTGGGAGCTGAGTGTAT
TAGGATCTTCTATGAATTTAACACTTCAACTGAACTAGAATACATTTTAT
CAAGGATATCCTCACTTTAATGAGATGAGAGTTCACATCTTTTTAAATCT
ATGTGGTTCTTCCTATGAACATCATGCACACTCTAAGAAGAATATAATTG
AATGCAGTCCTCTACATTGTTTATGTTTGACACATGTTTGAGATTAATCA
AATTGTAGTCACTTCTCATTAACAGCAGAGAATAATTTCAAAATGGGGCA
GAACCAGATGACAAACAATTGCTTATGTGGGTTCAAGACATACTTTATGA
ATGGAAACACATGCCTATTTTGACATCAAACTTGATAATTTTATTTTGCT
CTTATTGGTTTATGCACATAGAGCATTTTAAGGGAGTCTGCTCTATAGTG
GTCTCTTCGGTACAGAGTGAGCATTTGATGATTTAAAAAAAAATCAATGT
GATCTTTTCATGATACTACAGAAATCTAAAATTTCAGCATATGGACCTAG
TTGATAACACTGGACCTTTATAGGTTTTATCATAGGTTTATAAAAGGTTC
ACGGGAGAGCAGTATAAATTTTAAATTTCTATATGTCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_m15.g1 MSMg01no232_m15.g1 CHROMAT_FILE:
MSMg01no232_m15.g1 PHD_FILE: MSMg01no232_m15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:21 2005
         (363 letters)



>mm_chr3_6114552_6115314
          Length = 763

 Score =  687 bits (355), Expect = 0.0
 Identities = 361/363 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagaataatttcaaaatggggcagaaccagatgacaaacaattgcttatgtgggttcaag 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 gagaataatttcaaaatggggcagaaccagatgacaaagaattgcttatgtgggttcaag 260

                                                                       
Query: 61  acatactttatgaatggaaacacatgcctattttgacatcaaacttgataattttatttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acatactttatgaatggaaacacatgcctattttgacatcaaacttgataattttatttt 320

                                                                       
Query: 121 gctcttattggtttatgcacatagagcattttaagggagtctgctctatagtggtctctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctcttattggtttatgcacatagagcattttaagggagtctgctctatagtggtctctt 380

                                                                       
Query: 181 cggtacagagtgagcatttgatgatttaaaaaaaaatcaatgtgatcttttcatgatact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cggtacagagtgagcatttgatgatttaaaaaaaaatcaatgtgatcttttcatgatact 440

                                                                       
Query: 241 acagaaatctaaaatttcagcatatggacctagttgataacactggacctttataggttt 300
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 acagaaatctaaaatttcagcatatggacctagttgataacactggacatttataggttt 500

                                                                       
Query: 301 tatcataggtttataaaaggttcacgggagagcagtataaattttaaatttctatatgtc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatcataggtttataaaaggttcacgggagagcagtataaattttaaatttctatatgtc 560

              
Query: 361 att 363
           |||
Sbjct: 561 att 563


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 763
Length adjustment: 9
Effective length of query: 354
Effective length of database: 754
Effective search space:   266916
Effective search space used:   266916
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)