BAC Information

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BAC

Clone NameMSMg01-233M22
Chromosome3 (Build37)
Map Location 126,666,145 - 126,666,326
singlet/doubletsinglet
Overlap geneAnk2
Upstream geneArsj, Camk2d
Downstream geneLOC100043749, LOC100043361, LOC100043364, Larp7, 4930422G04Rik, Neurog2, Alpk1, T2bp, BC002199, 5730508B09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-233M22.T7 (MSMg01no233_m22.b1)MSMg01-233M22.TJ (MSMg01no233_m22.g1)
ACCAG399892AG399893
length738747
length of high quality
(start - end)
182 (448 - 629)---
definitionCHROMAT_FILE: MSMg01no233_m22.b1 PHD_FILE: MSMg01no233_m22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:36 2005CHROMAT_FILE: MSMg01no233_m22.g1 PHD_FILE: MSMg01no233_m22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATCCATGATAAC
ATCTTGCTGCTGCACAGAGCTTTCCTGGGATTCCCAACAGTTTTGATTTT
CCCAGAGAACAATTTTTCCCCTCCATTTTTGGCTAGCGCCCTGGCAGTGA
ACCTCAGAAGGAACAGACTAGACAGCCATGAGCTCCCCTGGCACAGAAAC
ACCTCCATTGTACACTCTGGGTCTCAGGTTCCTTGCTCTTTGTGACCAAT
GGAGGGGGCAGAACCAAACGCAGTGTGAAACCAAACTTCACCCTGTGATG
CTGGGGTTCTGTGGACTTTTTTTCTGAAGCTCACTTCTGTTCTTTCTTTC
ATTGTTGCGTTGGATGCCCNANACCAAAGCTCACCTGNCAACGGCTCCTC
CCCCACTTAATGAGGGAGAAAGAATGAACNAAAAAATCCTTGAGGTGGGG
CCTCCTGGAACCAAATTCCTTGGGTAGGAGCGACTTAAAACAAATTGATG
GCTGCTGGCCCCCATTCTTCTCCTTCTTCTGCGATATGATTTCTCTTTTC
GTCATTGTGCCCATGACATGTCCCTCTCTATGATTTAAACTCTGTATAAT
CTATCTTTAGTGGACCATTTCTGACCCTTGTGGTATGGGACTTTTATTTT
TGAGTGACGTTTTTATATCCTCTCCCTTAAAGTGCTGAGACCTTCATTTT
TGTTCAAGCATGAGATTTGCCTAGTTGTACTCTGTGCT
ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACTCTATCTAATATCTAATAGTTGCACAAAT
TAGCTATCGTGGCTTATGTCATATGAACTGGTATGTTTTCTGATTTCTGG
GATAAAATGGGGAATGAATCCCATGTGGGGATTTGCGGAAACCATCTGCT
TCCATATCCCTTTAATCGAATAGCTTGTAACTGAACAGAATGACTAGCTA
TCTCAGGACTTTCTTTTTATGCTTTTGAAGAAGGAGAACAAAACTACTGT
CCACTCACTGAATACATGAGACCCCAGAGAATTCAGAGATGGCCTACAGA
AGTGGAGAATCTGTTCTGTGCTACTCATGCCCTGTGGACCTGTCAATCAC
CACCACGACCGATCTGACTTACTGCTCAAGGAATTATCTGAAGCCTGTAC
TTAAACTGATGCCAGGAAGATCACTGTCCTATTGACCTTTGGAAGAAGGC
AGGACAAAGGAATATGAGCTTTTGATCCTGCTGGGGGGACATTTGCATCT
GATGCACAGGGTCTGACTGCCTGTTCCTAAGCAAAGACATGTAATGCACA
CTCGCACACAACTAGAATTCATCCAATCCCCTCTCAACTGCTGTGGACTG
CTGGACAGCATTGGTGAATTCTATGTCGCCTACACTTTAAGGATAAGTCT
TCATTTAAAAGTAATGGAAGCCTGCAGTAAGCTCTCAAAGCCACCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no233_m22.b1 MSMg01no233_m22.b1 CHROMAT_FILE:
MSMg01no233_m22.b1 PHD_FILE: MSMg01no233_m22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:36 2005
         (182 letters)



>mm_chr3_126665945_126666526
          Length = 582

 Score =  352 bits (182), Expect = e-102
 Identities = 182/182 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gggcctcctggaaccaaattccttgggtaggagcgacttaaaacaaattgatggctgctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gggcctcctggaaccaaattccttgggtaggagcgacttaaaacaaattgatggctgctg 323

                                                                       
Query: 61  gcccccattcttctccttcttctgcgatatgatttctcttttcgtcattgtgcccatgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gcccccattcttctccttcttctgcgatatgatttctcttttcgtcattgtgcccatgac 263

                                                                       
Query: 121 atgtccctctctatgatttaaactctgtataatctatctttagtggaccatttctgaccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 atgtccctctctatgatttaaactctgtataatctatctttagtggaccatttctgaccc 203

             
Query: 181 tt 182
           ||
Sbjct: 202 tt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 182
Length of database: 582
Length adjustment: 8
Effective length of query: 174
Effective length of database: 574
Effective search space:    99876
Effective search space used:    99876
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)