Query= MSMg01no234_b11.b1 MSMg01no234_b11.b1 CHROMAT_FILE:
MSMg01no234_b11.b1 PHD_FILE: MSMg01no234_b11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:57 2005
(626 letters)
>mm_chr3_132367417_132368446
Length = 1030
Score = 957 bits (495), Expect = 0.0
Identities = 549/569 (96%), Gaps = 8/569 (1%)
Strand = Plus / Plus
Query: 64 aaaaaaaccagtgattccatctaatcgttactattgcctcaatatttataattcttttaa 123
||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 264 aaaaaaa-cagtgattccatctaatcttta-tattgcctcaatatttataattcttttaa 321
Query: 124 aatatactttttgtggttgctttcagatactaattttaaaaaataaaac--ggctagaaa 181
||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 322 aatatactttttgtggttgctttcagatattaattttaaaaaataaaacatggctagaaa 381
Query: 182 aaaaccctc--attaaaatattaacactgataatattagaaggttggattgaatga--tt 237
||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct: 382 aaaaccctcatattaaaatattaacactgataatattggaaggttggattgaatgatttt 441
Query: 238 tttttttttgttcttctcggtatatactaaagaaactcagggacaaacagggtgagagag 297
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 442 tttttttttgttcttctcagtatatattaaagaaactcagggacaaacagggtgagagag 501
Query: 298 gtgggagaaatgatgaggaaaatgggcgtctctatgaaacttgacatagagagggtggag 357
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 502 gtgggagaaatgatgaggaaaatgggcgtctctatgagacttgacatagagagggtggag 561
Query: 358 aagatttaaaacgtgtttgataagtcatgaactactggaatgattcacaaggtgatatgg 417
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 aagatttaaaacgtgtttggtaagtcatgaactactggaatgattcacaaggtgatatgg 621
Query: 418 aaatatataatgtctatatagtataaaatacatcatattttcatggacttagttgttttg 477
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 622 aaatatataatgtctatatagtataaactacatcatattttcatggacttagttgttttg 681
Query: 478 tttttgtttgtacagagtacatggcttttattgatttgtcctaaacgttttaaaataaac 537
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 682 tttttgtttgtacagagtacatggcttttattgatttgtcccaaatgttttaaaataaac 741
Query: 538 tggcaatttgttaaaacaccaagcccgtgagtggcaagtgcatctcattttgctataaat 597
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 742 tggtaatttgttaaaacaccaagcccgtgagtggcaagtgcatctcgttttgctataaat 801
Query: 598 cacccaaacttcaagtctttcccagggaa 626
|||||||||||||||||||||||||||||
Sbjct: 802 cacccaaacttcaagtctttcccagggaa 830
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 61
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1030
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1020
Effective search space: 628320
Effective search space used: 628320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no234_b11.g1 MSMg01no234_b11.g1 CHROMAT_FILE:
MSMg01no234_b11.g1 PHD_FILE: MSMg01no234_b11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:57 2005
(297 letters)
>mm_chr3_132452917_132453613
Length = 697
Score = 522 bits (270), Expect = e-153
Identities = 288/294 (97%)
Strand = Plus / Minus
Query: 1 agtaacacgctcctaaaagaccaatggctaactggagaagttaaaaaagaaatacaaaat 60
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 654 agtaacacgctcctaaaagtccagtggctaactggagaagttaaaaaagaaatacaaaat 595
Query: 61 gctataagaatgaaaatgaccctaacataccagagtctatgaagtctgggtaaagaagca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 gctataagaatgaaaatgaccctaacataccagagtctatgaagtctgggtaaagaagca 535
Query: 121 cattacagagaagcatgcagtagtacatgggcaaatcaaaggcgctgccccacagactct 180
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 534 cattacagagaagcatgcagtagtacatgggcaaatcaaaggcgctaccccacagactcc 475
Query: 181 gcagcacactaacaatccggagtgagagcaaagaaaatccaaacgagagaaaggactgac 240
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 474 gcagcacactaacaatctggagtgagagcaaagaaaatccaaacgagagaaaagactgac 415
Query: 241 aaccagaatggaaattttaaaaactacaatcaatcaaagcagcttcttgttgtt 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 aaccagaatggaaattttaaaaactacaatcaatcaaagcagcttcttgttgtt 361
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 697
Length adjustment: 9
Effective length of query: 288
Effective length of database: 688
Effective search space: 198144
Effective search space used: 198144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
