CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTAGGTTGATAACTCCACTCACAACCTGTAATATATAACTTTATTC
TCTTATAGCCAGCACACTATTCTTTAATTCAGATTATATTCTGAGTCTCA
AGAAAATTTAAAGAATTTCTTAGAACTGATGACATAAAATTTTACAACCA
TATACCTCTCTATTTAGATATATTTTATTCACTGTTTGGGGCTCTGAAAC
AGGGCATTCAATTCTGGAGACCATATTCTTTACTACTGAGGGTGTATACT
AACTATTCAAATTATTTTTAAGATTTTTTTCTGTTTTCTCTATCTGGAAT
TTAAGGTTTGATGGTTAGAGACCTTCCATATGACAACACATATGTGGAGA
AATGCGCTCTCTCACTTTCTATTTACAAGCACAGAGAAAAATGTACTCAA
CATTATACATATATTAATGTATTTATACTTTATTTATTATGATTGACATA
TTCTGGAAGAGCCCCTCTGTTGTGCTAACTTCCTGACTGAATTTTTAAAA
ATAGCTATAGCTAGGCATGGTGGTGAATGCTTTTAAGTAGATCACTTGGG
AAGCAAGGTTAGGATGATTTATGTGGTTCAAGGCCACCCTGGTCTACATA
TTGAGCTGCAGGCCAGCCAGGGTGATATAGTGAGACACTGTGTGCAGGAT
AAATAAATATATGTA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTAATCCAGGAACATGACTGCTTTG
GTAAGGGATTTACATCCATAGATATGATCCAGCTGGAATGTAGCCATGCC
ACACACCTTTAATTCTTCTGGTTGGAATACATACCTTTAATCCCTCTGGC
TGGAATACAGTCTTGCCTTTAGTATATACCTTTAATCCCAAACAATGCTG
TCTAATTGAGTGGCAGACAAAGTGATAAATCAGAGAAAGATTTGAGAAAA
TAAGTGAGTGGTAGGATAGTCCCAATTCTCGTGAGGCAGACAAGAAAGAG
AGGCTACTTCCAAAGCTATAAGGCAGACAGAATTCAATGCAATTCAATTC
AATGCAGTTTACATTTGACCACCTGTTTGACCAGAAAAGAAAGTGTTAGG
AATGAGGAGGATGTCTTTCTCATGGGAGCTTTCAGCCTGACTTCATCAAA
GGCTATGGAAGAGAGCTGGTCATGGAGGCAGAGAGACACAGACATCAGTG
GTAAATGATAGCTATCATCATAGTCAGTAGTACCATTAATAATAATAATA
GTAAAGATGCCAGGCATGGTGGCACACACCTTTAATCCCAGCACTTGAGA
GGCAGAGGCAGGCTGATTTCTGAGTTTGAGGACAGCCTGGTCTACAAAGT
GAGTTCCAGGACAGCCAGTG

Query= MSMg01no235_b14.b1 MSMg01no235_b14.b1 CHROMAT_FILE:
MSMg01no235_b14.b1 PHD_FILE: MSMg01no235_b14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:19 2005
         (652 letters)



>mm_chr3_117195969_117197020
          Length = 1052

 Score = 1216 bits (629), Expect = 0.0
 Identities = 644/649 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctaggttgataactccactcacaacctgtaatatataactttattctcttatag 63
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctaggttgataattccactcacaacctgtaatatataactttattctcttatag 263

                                                                       
Query: 64  ccagcacactattctttaattcagattatattctgagtctcaagaaaatttaaagaattt 123
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 264 ccagcacactattctttaattcagattatattctgagtctcatgaaaatttaaagaattt 323

                                                                       
Query: 124 cttagaactgatgacataaaattttacaaccatatacctctctatttagatatattttat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cttagaactgatgacataaaattttacaaccatatacctctctatttagatatattttat 383

                                                                       
Query: 184 tcactgtttggggctctgaaacagggcattcaattctggagaccatattctttactactg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcactgtttggggctctgaaacagggcattcaattctggagaccatattctttactactg 443

                                                                       
Query: 244 agggtgtatactaactattcaaattatttttaagatttttttctgttttctctatctgga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agggtgtatactaactattcaaattatttttaagatttttttctgttttctctatctgga 503

                                                                       
Query: 304 atttaaggtttgatggttagagaccttccatatgacaacacatatgtggagaaatgcgct 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 atttaaggtttgatggttagagaccttccatatgacaacacatatgtggagaaatgcgct 563

                                                                       
Query: 364 ctctcactttctatttacaagcacagagaaaaatgtactcaacattatacatatattaat 423
           |||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 564 ctctcactttttatttacaagcacacagaaaaatgtattcaacattatacatatattaat 623

                                                                       
Query: 424 gtatttatactttatttattatgattgacatattctggaagagcccctctgttgtgctaa 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gtatttatactttatttattatgattgacatattctggaagagcccctctgttgtgctaa 683

                                                                       
Query: 484 cttcctgactgaatttttaaaaatagctatagctaggcatggtggtgaatgcttttaagt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 cttcctgactgaatttttaaaaatagctatagctaggcatggtggtgaatgcttttaagt 743

                                                                       
Query: 544 agatcacttgggaagcaaggttaggatgatttatgtggttcaaggccaccctggtctaca 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 agatcacttgggaagcaaggttaggatgatttatgtggttcaaggccaccctggtctaca 803

                                                            
Query: 604 tattgagctgcaggccagccagggtgatatagtgagacactgtgtgcag 652
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tattgagctgcaggccagccagggtgatatagtgagacactgtgtgcag 852


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space:   668964
Effective search space used:   668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)