BAC Information

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BAC

Clone NameMSMg01-235G12
Chromosome3 (Build37)
Map Location 37,675,691 - 37,784,383
singlet/doubletdoublet
Overlap gene4930556A17Rik
Upstream gene4932438A13Rik, Tenr, LOC652987, Il2, Il21, Cetn4, Bbs12, LOC100041328, Fgf2, LOC100040649, Nudt6, Spata5, LOC665778, Spry1, EG381438, LOC100038875, LOC100041338, EG626367
Downstream geneLOC665811, EG665821, LOC100041366, LOC100040785, LOC665838, Ankrd50, LOC100041378, LOC665855, LOC100040824
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-235G12.T7 (MSMg01no235_g12.b1)MSMg01-235G12.TJ (MSMg01no235_g12.g1)
ACCAG400989AG400990
length721741
length of high quality
(start - end)
269 (45 - 313)284 (77 - 360)
definitionCHROMAT_FILE: MSMg01no235_g12.b1 PHD_FILE: MSMg01no235_g12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:43 2005CHROMAT_FILE: MSMg01no235_g12.g1 PHD_FILE: MSMg01no235_g12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,675,691 - 37,675,955)(37,784,101 - 37,784,383)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTCCTAGCAAGCTGAAAGCATACTTCCTAGATAGTGTGTGACGCC
GGGTCTATCTTCAACATACACCCCTGGTTCACATGTTTAGACAATTTTTG
CTACAAACCTGGCAGTCATCTTCCTACTGATGGGGTGAACGTTCACAATG
GACTAGATCAGTTGGTGAGATTTTCCATGAAAGGAAGGCAGCTACAGTTC
TGAAACTGGAAAATGAACGTAATCATGGTTAGGACCATTCATCGCCCCTA
CATGGGTTCTATATTTTTTTAAGATTTACCCTATAAAATGAGCACTGACC
TATACACTTGGTACNTGATCTTAGCCCGCCTGTACTGATAGCATTCCATG
GGATAAACGCTGACCAACNCACTNAGAAATGGTCCCTTTGAGCTCCTTGT
GACCCTCAGCCCACCACTTTCACTTGTTTGATGCTGGTAGCCTGCACTTT
GCTTTCAGCTTGCCCCAAAGGCTTCTCTTTGGAATCTGTCACACCAGCAA
TAGTCAAAATGGCACCAAGGGCACCATCTAAGTAGTCCCTTTTTAAAATG
ACTGCATTGAAGAGTACTCTTTTAGGTCTTCATGTCAAGAATGTTAAGAG
TGGTAGGTTTTTTTCTTTTTTTTCTCTGAATAGCTGGCTTGTTTTTATTT
ACACCCTATTATCCTGTGACT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCATGTTGGACATATGACTTT
AATCACCCACTAGCCCATCCACATGGAAATGTGTGCTAACTGAATGAAAG
CAAAAGTCATAAATTTAGGAGAAAACCAAGTATTTTAAGCCAGTATTTTT
TTCTTTTAATGAGTTTAGCTTTAGACTTTGCTTAAGTGGACCAGTTAATA
TCCAAAGCAAAACACTCTGCTAAAATAAACAGAAGAATTTGTGAAAACTA
GTTTCCAGAAATTACCTAAGTGATTTTTATATGATCTGATTTCTTTCTCA
TTTCTTTAATTTTTAAAGGCCCCCCCCCCCGCATGTGTGAGCGTATTTGA
AACTCCCCAATGAGAGAGCCTGTATTGATGTAACAGAGCACCCTGAATTG
ATGTTACAAGGATGACTTTCTCAGAGCCTCAGTGGCTCATCTTCCCTTTA
AACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTTNNNNT
TTTTTTATTTTTAAATGTGCAAAAAAATACATGAAGTGTTATGTTGAGTT
TAATCTCTCCTTATTCGCTCCTTTATTTAAACTTTTTTATCTAAAATATA
GATTTTATTTATACTTTTTCTACAATAACAATCCTATTTATTATACATAT
AAACATACCCATACACTATATATAGTCAGAGGCTTAATACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no235_g12.b1 MSMg01no235_g12.b1 CHROMAT_FILE:
MSMg01no235_g12.b1 PHD_FILE: MSMg01no235_g12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:43 2005
         (269 letters)



>mm_chr3_37675487_37676155
          Length = 669

 Score =  513 bits (265), Expect = e-150
 Identities = 265/265 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattcctagcaagctgaaagcatacttcctagatagtgtgtgacgccgggtctat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattcctagcaagctgaaagcatacttcctagatagtgtgtgacgccgggtctat 264

                                                                       
Query: 65  cttcaacatacacccctggttcacatgtttagacaatttttgctacaaacctggcagtca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cttcaacatacacccctggttcacatgtttagacaatttttgctacaaacctggcagtca 324

                                                                       
Query: 125 tcttcctactgatggggtgaacgttcacaatggactagatcagttggtgagattttccat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcttcctactgatggggtgaacgttcacaatggactagatcagttggtgagattttccat 384

                                                                       
Query: 185 gaaaggaaggcagctacagttctgaaactggaaaatgaacgtaatcatggttaggaccat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaaaggaaggcagctacagttctgaaactggaaaatgaacgtaatcatggttaggaccat 444

                                    
Query: 245 tcatcgcccctacatgggttctata 269
           |||||||||||||||||||||||||
Sbjct: 445 tcatcgcccctacatgggttctata 469


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 669
Length adjustment: 9
Effective length of query: 260
Effective length of database: 660
Effective search space:   171600
Effective search space used:   171600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no235_g12.g1 MSMg01no235_g12.g1 CHROMAT_FILE:
MSMg01no235_g12.g1 PHD_FILE: MSMg01no235_g12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:44 2005
         (284 letters)



>mm_chr3_37783901_37784584
          Length = 684

 Score =  547 bits (283), Expect = e-160
 Identities = 283/283 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttcatgttggacatatgactttaatcacccactagcccatccacatggaaatgtgtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 ttttcatgttggacatatgactttaatcacccactagcccatccacatggaaatgtgtgc 424

                                                                       
Query: 61  taactgaatgaaagcaaaagtcataaatttaggagaaaaccaagtattttaagccagtat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 taactgaatgaaagcaaaagtcataaatttaggagaaaaccaagtattttaagccagtat 364

                                                                       
Query: 121 ttttttcttttaatgagtttagctttagactttgcttaagtggaccagttaatatccaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ttttttcttttaatgagtttagctttagactttgcttaagtggaccagttaatatccaaa 304

                                                                       
Query: 181 gcaaaacactctgctaaaataaacagaagaatttgtgaaaactagtttccagaaattacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 gcaaaacactctgctaaaataaacagaagaatttgtgaaaactagtttccagaaattacc 244

                                                      
Query: 241 taagtgatttttatatgatctgatttctttctcatttctttaa 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 taagtgatttttatatgatctgatttctttctcatttctttaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)