BAC Information

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BAC

Clone NameMSMg01-236B16
Chromosome3 (Build37)
Map Location 154,722,337 - 154,722,466
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc44a5, LOC100040980, Lhx8, LOC100040810, LOC100040829, Tyw3, Cryz, BC007180, Tnni3k
Downstream geneFpgt, Lrrc44, EG383956, Scp2-ps1, EG668902
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-236B16.T7 (MSMg01no236_b16.b1)MSMg01-236B16.TJ (MSMg01no236_b16.g1)
ACCAG401466AG401467
length720842
length of high quality
(start - end)
607 (36 - 642)130 (127 - 256)
definitionCHROMAT_FILE: MSMg01no236_b16.b1 PHD_FILE: MSMg01no236_b16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:35 2005CHROMAT_FILE: MSMg01no236_b16.g1 PHD_FILE: MSMg01no236_b16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATACA
GATTTCCCGGTATGTTTACACAATGGAGCACTACTCAGCTATTAAAAAGA
ATGAATTTATGAAACTCCTAGGCAAATGAATGGACCTGGGGGGCATCATC
CTGAGTGAGGTAACCCAATCACAAAAGAACTCAAATGAAATGTACTCACT
GATAAGTGGATATTAGCCCAGAAACTTAGGATACCCAAGATATAAGATAC
AATTTGCTAAACGCATGAAACTCAAGAAGAACAAAGACCAAAGTGTGGAC
ACTTTGCCCTTTCTTAGAATTGGGAACAAAACACCCATGGAAGGAGTTAC
AGAGACAATATTTGGAGCTGTGATGAAAGGATGGATCATCTAGTAATTGC
CATATCCATGGATCCACCCCATAATCAGCTTCCAAACACTGACACCATTG
CATACACTAGCAAGATTTTGCTGAAAGGACCCAGATATAGCTGTCTCTTG
TGAGACTATGCCGAGGCCTAGCAAACACAGAAGTGAATGATCACAGTCAG
CTATGGGATAGAGCAAAGGACCCCCAATGGAGGAGCTAGAGAAAGTACCC
AAGGAGCTAAAGAGATCTGCAACCCTATAGGTGGAACCACATTATCAACT
AACCAGTACCCCAGAGCTCTTGACTCTAGCTGCATATGTATCAAACGATG
CCTAGTCCGCCATCACTGTN
CCCCCTTTTTTTTTTTCCCTTCTATTCTTACTTCCTTACAAANNCNNCCC
ACTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATAATGAGGAAAATCATGATGGGA
AAGAGTAAATATGAACTTACATTAGGACTCAACTTTTCTTAGAACAAACC
CACTATATCAAAAACATTTACCAATCTTAAAAATTAAGAAAAATGATACA
AATAAACTTGGCTTCCAAAATTAAAGTCTGGGGGCAAGAAAAGTGGCCCC
AGTAGTTGAAGGTGTTTGCTCAAGAGTCTGAGAACCTGAAGGCACGGTGT
GAAATAATATGGGGGAAGGCAGGAACCAGAATCAGCTTCACATGGTTGTC
CTCTGATATCCCCATGTGTTATGTGTTAAAGGAACTGTCCCTGGACACAC
AGAAAAAGCACATTGCACCCTTCAAACACACACCTATTTACCCCCTTTGT
ATTTACTTTTTATTCCCCCCCACATTAAAGTGTTTTTTTTATTTTCAAAC
CCGACCCCCCCCTCACCCTAATTATTTTTTTACCATATTTTTTCTCCATA
TTTACCCCGAATTTTCTTAAAAAAACAATTTTTTTTTATACCGGTGGATC
CACCCACCGCACCAATCCTTTATAAATCTCCCATAAAATACGGGTATGTG
CCTGTATATAATAAAATAATATTTTTAACTGCTTTTTTTTTATACTCCTT
CATTCCTGCCCTCTATTTTTATTTTTTCTTCCCTTTTTTCCCCTTCTTCT
ACCAACCCCCTTTTTTTTAAACTATTTCCACCCCCCCCACGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no236_b16.g1 MSMg01no236_b16.g1 CHROMAT_FILE:
MSMg01no236_b16.g1 PHD_FILE: MSMg01no236_b16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:35 2005
         (130 letters)



>mm_chr3_154722137_154722666
          Length = 530

 Score =  244 bits (126), Expect = 2e-69
 Identities = 129/130 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataatgaggaaaatcatgatgggaaagagtaaatatgaacttacattaggactcaacttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataatgaggaaaatcatgatgggaaagagtaaatatgaacttacattaggactcaacttt 260

                                                                       
Query: 61  tcttagaacaaacccactatatcaaaaacatttaccaatcttaaaaattaagaaaaatga 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcttagaacaaaaccactatatcaaaaacatttaccaatcttaaaaattaagaaaaatga 320

                     
Query: 121 tacaaataaa 130
           ||||||||||
Sbjct: 321 tacaaataaa 330


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 130
Length of database: 530
Length adjustment: 8
Effective length of query: 122
Effective length of database: 522
Effective search space:    63684
Effective search space used:    63684
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)