BAC Information

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BAC

Clone NameMSMg01-236B17
Chromosome3 (Build37)
Map Location 103,134,092 - 103,134,520
singlet/doubletsinglet
Overlap geneTrim33
Upstream geneEG433633, Ngfb, Tspan2, Tshb, Sycp1, LOC668425, LOC100043517, Nr1h5, 5730470L24Rik, Csde1, Nras, Ampd1, Dennd2c, Bcas2
Downstream geneSyt6, Atg4a-ps, LOC100043538, Olfml3, Hipk1, Dclre1b, Ap4b1, Gm566, Ptpn22, LOC668452, Rsbn1, Phtf1, Magi3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-236B17.T7 (MSMg01no236_b17.b1)MSMg01-236B17.TJ (MSMg01no236_b17.g1)
ACCAG401468AG401469
length723832
length of high quality
(start - end)
431 (38 - 468)81 (125 - 205)
definitionCHROMAT_FILE: MSMg01no236_b17.b1 PHD_FILE: MSMg01no236_b17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:35 2005CHROMAT_FILE: MSMg01no236_b17.g1 PHD_FILE: MSMg01no236_b17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAATGCGCGGAATTCTTTGT
TATCCCGATCAAAATGTCATGTTAAAAAGCATACTAACTGTATCAGGAAA
ACTCTAACTTTGATTTTCAGAATTATCATTTGTGACTAAAGGTAAATCAA
ATGTTCCTTGACTTGTTTTTCACTCTAGGCAATGAGCTTAGATAAACAGA
GTATCTTAATCCATACTGTAAGTTTAAAGAGACAAATTTTCATGTGAATG
TACATTTTTTTGGGCAAACAGATATATGTAGAATATCAAACTATCATAAA
TATCAAAGACCCTCATCATCAACTCTAATTATAAAAAATGATCTTTTAGT
TTTAAAATTGTATGATTCTTACAAATGTAACTCTAGGCATACTTGTCTTT
GGAGATGTGGCTGCATCATGGAATACTGAGGGGCACTGTGCCTGGGGATC
CCTGGTATTCTGGCAGCATTCTGAGCCAGTCTCATTTGATGCGTTTGAAA
TGCTCCACAGTTCAATGTTGCTCTTTGGATTGTTTGCTCCTTGATCAATC
TTGCAAGCTGGTAAAAAAGATAAATTTTTAATTTTATAAAAGACGTCCCC
TTTTTTTTCTTTTTTTCCCTTTCTCCCTCTGGATTCTTCTAAAACGGGTA
TTTCTTTTTTTCACTTCCTCGGTTGGTTCTCCGCAAATCCCTCATTACAT
TACCCATTTTTTTTCTCTCCCTN
CTTCTTTNCTTCCTCCTTTTTTTTTTCTCCCTTTTTATATATCCCNTTTC
TATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAAGCCTCTAATACTTTGTTTTCTTT
ATTTTTTAAAAGGTTTATTTATCCCATGCATGTGAGTACACTGTAGCTGT
CTTCAGATACACCAGAAGAGGGCACCAGATCCCATTACAGATGATTGAAA
GCCATCATGTGGTTGCTGGGGATTGAACTCAAGACCTCTGGAATACCAGT
CAATGCTCTTAACCATTGAGTCATCTCTCCAGTCCCTACATTTTCTATTA
ATAACTTATCTATCTCCTCATGTTCTAAAGCTAATGGTTCTGGTAAACCT
GCATTCAATCTTATATTTTTATCCGTGCGTGTCCGTGTGTGTGTGCGTGA
GTGTGTGTGCCCCCTCTTCCCCCCCAAAAAAATAACCTTATTTCGGCCCG
GCCCCCCCCCCCTTTTTTTTTTTCCTATTTTTCCCCCTCCCACACTTTCC
ACTATTATAAACCCCTAATTTCTATTTTCCCCCCCCCCTTCCCCCCCCCC
CTTTTTTCCCCCCCCCTTTTTTCCCTTTTTTTCCCCCCCCCCTTTTTTTT
TTCCATCCCCCCCCTTTTTTTTTTTTCCCCCCCTATTTTTTCCTATCACC
ATTTTCTTTCTATATCTTATATTATTTCCCTTTCTCCCCCCCTTTATTTT
CCCCCTCCCATTTAACCCCCCCACCCCTTATTACCTTATTTCACCACATC
CTTTTTTTGAAAACCATATTACAATTACATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no236_b17.b1 MSMg01no236_b17.b1 CHROMAT_FILE:
MSMg01no236_b17.b1 PHD_FILE: MSMg01no236_b17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:35 2005
         (431 letters)



>mm_chr3_103133890_103134720
          Length = 831

 Score =  799 bits (413), Expect = 0.0
 Identities = 425/429 (99%)
 Strand = Plus / Minus

                                                                       
Query: 3   gaattctttgttatcccgatcaaaatgtcatgttaaaaagcatactaactgtatcaggaa 62
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 gaattctttgttatcaagatcaaaatgtcatgttaaaaagcatactaactgtatcaggaa 572

                                                                       
Query: 63  aactctaactttgattttcagaattatcatttgtgactaaaggtaaatcaaatgttcctt 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 aactctaactttgattttcagaattatcatttgtgactaaaggtaaatcaaatgttcctt 512

                                                                       
Query: 123 gacttgtttttcactctaggcaatgagcttagataaacagagtatcttaatccatactgt 182
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 511 gacttgtttttcactctaggcaatgagcttagataaacagagtatcttaatccatattgt 452

                                                                       
Query: 183 aagtttaaagagacaaattttcatgtgaatgtacatttttttgggcaaacagatatatgt 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 aagtttaaagagacaaattttcatgtgaatgtacatttttttgggcaaacagatatatgt 392

                                                                       
Query: 243 agaatatcaaactatcataaatatcaaagaccctcatcatcaactctaattataaaaaat 302
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 391 agaatatcaaactatcataaatatcaaagaccctcatcaacaactctaattataaaaaat 332

                                                                       
Query: 303 gatcttttagttttaaaattgtatgattcttacaaatgtaactctaggcatacttgtctt 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 gatcttttagttttaaaattgtatgattcttacaaatgtaactctaggcatacttgtctt 272

                                                                       
Query: 363 tggagatgtggctgcatcatggaatactgaggggcactgtgcctggggatccctggtatt 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tggagatgtggctgcatcatggaatactgaggggcactgtgcctggggatccctggtatt 212

                    
Query: 423 ctggcagca 431
           |||||||||
Sbjct: 211 ctggcagca 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 831
Length adjustment: 9
Effective length of query: 422
Effective length of database: 822
Effective search space:   346884
Effective search space used:   346884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)