BAC Information

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BAC

Clone NameMSMg01-236C08
Chromosome3 (Build37)
Map Location 144,230,541 - 144,230,817
singlet/doubletsinglet
Overlap geneHs2st1
Upstream geneEG668889, EG621809, LOC100039938, LOC100039952, Lmo4, LOC545572
Downstream geneSep15, LOC435761, Sh3glb1, LOC668890, Clca1, Clca2, Clca4, EG622139, AI747448, Clca6, Clca3, Clca5, Odf2l, Col24a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-236C08.T7 (MSMg01no236_c08.b1)MSMg01-236C08.TJ (MSMg01no236_c08.g1)
ACCAG401494AG401495
length724726
length of high quality
(start - end)
279 (429 - 707)272 (432 - 703)
definitionCHROMAT_FILE: MSMg01no236_c08.b1 PHD_FILE: MSMg01no236_c08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:38 2005CHROMAT_FILE: MSMg01no236_c08.g1 PHD_FILE: MSMg01no236_c08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTAGCTGTCCAGGCTCAACCTGATTGAATGTGCCTATTGTCTTCC
TGACCTAACAGTTTCCTCTCTCGCACTTGGAAGCTGTTTGTGGACGCCAC
CAGAATAGCTGTAGGGGTTAAGTTACCTGAGGATATAGAACACCACAGGT
AGAACCATGCGTACCCTCATAGTTTTCATAAAAGGGGAAAAAAAAAGTCC
TGTCAGGAATAAGTGCGCCCGAATGAGTATCTATGAGGGAAACAGCAATT
ATGCGCCAGAATAAATAATTCTGATAGATAGGCCAGGGCTGACCACGGTG
GGCCAGGTCTGTATTTCCCCTACTCTAAAAGCTGACACCCCAGGATGGTG
AGTTCAAGACCAGTATGGGCTGCTGCATAGCATTATCCTGTCTTAAAGAA
AAAAAAAAAAGAGAGAGAAAAATAGCTTTCAAAGTAACCCAGAGATGCCG
GCATGACAGATAATATAACTTTATATCAGCTCATTAATCTTCTGATTAGA
TTTTTTTTTTGTAAATATTTTTATTTTTAAAAGACACAGGTGTTATGTTG
TGTTTCCCAGGCTGGGCCAGAACTCCTGGCCTCAAGTGTTCTTCCTTCTT
CATCCTTGAGAGAAACTGTAAATGTCCTTCACCTTGCCTCCTTCCCACTC
CCACCCCCTTATAAAACCAGTATT
CGATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCTAGGGCTATACAGAG
AAACTCTGTCTCGAAAAATTAAACCCCAAAAATAAACAACAACAACAAAA
AGATTTCTATTTATACGGCCACCCCCCATCACACACCCCAGAGAACAGCG
GGTCACAAAGCACAAAGCAGAGACTTTGACTTTATCTGCAGTTTAAAAAG
ACAATTTACACAAAAAGCAGTGTCTGGGTCTCTCCCAGGCACTCGCCCTT
CTTTACCTTCTGACTACAAACCCCTGGAACCCTCAGATGTCCACCCACAG
GGATTTTGGGGTTGTTTTTTCCTACCACCCCCAAAAATCTGCCTCTTCTT
TTTAATTAATTAATTTACTATTAATTATTAAAGAATAAATAAATAATTTA
TTTACTTTATATCCTAATGGCAGCTTCCCCTCCCTCCTCTCCCCCCAGTC
CCCACCTCTCACTTCCCCTTCCCCTCACCCTCCAGCCCTCCCTTTCTCCT
CAGAAAAGGGGAGACCCCCCCCCATGGATATCAGCCCACCTTGGCCCATC
AAGTTGCAGTAGGACTAGGCGCCTCTTCTCCTAGACAGGGCAGCCCAGTG
AGGGGAACGGGACCAAAGGCAGGCAAGAGAGTCAGAGACAGCCCTGCTCC
TGCTTTAGGAGTCCCACATGTAGATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no236_c08.b1 MSMg01no236_c08.b1 CHROMAT_FILE:
MSMg01no236_c08.b1 PHD_FILE: MSMg01no236_c08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:38 2005
         (279 letters)



>mm_chr3_144230480_144231156
          Length = 677

 Score =  516 bits (267), Expect = e-151
 Identities = 276/279 (98%), Gaps = 2/279 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcattatcctgtcttaaagaaaaaaaaaaaagagagagaaaaatagctttcaaagtaac 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 338 agcattatcctgtcttaaagaaaaaaaaaaaagagaga-aaaaatagctttcaaagtaac 280

                                                                       
Query: 61  ccagagatgccggcatgacagataatataactttatatcagctcattaatcttctgatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 ccagagatgccggcatgacagataatataactttatatcagctcattaatcttctgatta 220

                                                                       
Query: 121 gattttttttttgtaaatatttttatttttaaaagacacaggtgttatgttgtgtttccc 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 ga-tttttttttgtaaatatttttatttttaaaagacacaggtgttatgttgtgtttccc 161

                                                                       
Query: 181 aggctgggccagaactcctggcctcaagtgttcttccttcttcatccttgagagaaactg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 160 aggctgggccagaactcctggcctcaagtgttcttccttcttcatccttgagagaaattg 101

                                                  
Query: 241 taaatgtccttcaccttgcctccttcccactcccacccc 279
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 100 taaatgtccttcaccttgcctccttcccactcccacccc 62


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 677
Length adjustment: 9
Effective length of query: 270
Effective length of database: 668
Effective search space:   180360
Effective search space used:   180360
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)