Query= MSMg01no236_c10.b1 MSMg01no236_c10.b1 CHROMAT_FILE:
MSMg01no236_c10.b1 PHD_FILE: MSMg01no236_c10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:39 2005
(661 letters)
>mm_chr3_8691259_8692319
Length = 1061
Score = 963 bits (498), Expect = 0.0
Identities = 545/576 (94%), Gaps = 24/576 (4%)
Strand = Plus / Minus
Query: 86 ggtttaatttttaattctgctgaccattagtgcaaaggaatcagacatgactagtccact 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1061 ggtttaatttttaattctgctgaccattagtgcaaaggaatcagacatgactagtccact 1002
Query: 146 gagtacacttgtcgtactgacatgcttgggaaagcaggatttaaaatggttgttctgatg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1001 gagtacacttgtcgtactgacatgcttgggaaagcaggatttaaaatggttgttctgatg 942
Query: 206 ggaggcttttgtgatctggaaatttccatccttcttctgtttataactattatttattta 265
||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 941 ggaggcttttgtgatctggaaatttccatccttcttctgtttaaaacta----------- 893
Query: 266 tttatttatttatttatttatttatttatttatttatttatttaggcaggtcaaggcaga 325
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892 -------------ttatttatttatttatttatttatttatttaggcaggtcaaggcaga 846
Query: 326 tcagaaagactggtctggtgagagtaaacttggacttgaccatggctgctgttatttggg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 tcagaaagactggtctggtgagagtaaacttggacttgaccatggctgctgttatttggg 786
Query: 386 actgttgccacatccacagaaatgcatggaccatgaaagagtctgagtggtgacaccagc 445
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 785 actgttgccacatccacagaaatgcatggaccatgaaagagtctgggtggtgacaccagc 726
Query: 446 aggtcactaagagtgtcaccagattggaggaactagaagtgggaagctgtgccttcattc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 aggtcactaagagtgtcaccagattggaggaactagaagtgggaagctgtgccttcattc 666
Query: 506 ttcttggtactgagccctgcctttacaagtggcgtgcctatgacaggagactatcgtctc 565
||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 665 ttcttggtattgagccctgcctttacaagtggtgtgcctatgacaggagactattgtctc 606
Query: 566 tggcacagactccacctgtcatgttcttcctctctgtttgtcttcaggtcaaagaccaaa 625
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 605 tggaacagactccacctgtcacgttcttcctctctgtttgtcttcaggtcaaagaccaaa 546
Query: 626 gcattcgtgaagttgagggtgaatgaaagagaagta 661
||||||||||||||||||||||||||||||||||||
Sbjct: 545 gcattcgtgaagttgagggtgaatgaaagagaagta 510
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 8
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space: 684201
Effective search space used: 684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no236_c10.g1 MSMg01no236_c10.g1 CHROMAT_FILE:
MSMg01no236_c10.g1 PHD_FILE: MSMg01no236_c10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:39 2005
(279 letters)
>mm_chr3_8517377_8518054
Length = 678
Score = 478 bits (247), Expect = e-139
Identities = 271/281 (96%), Gaps = 5/281 (1%)
Strand = Plus / Plus
Query: 1 cttagtaacagaaacctaacttccatgggagattgtggggt--ggcggctaattgataag 58
|||||||||||||||| ||||||||||||||| |||||| || ||||||||||||||
Sbjct: 201 cttagtaacagaaaccgaacttccatgggaga---tggggtgggggggctaattgataag 257
Query: 59 atatgttgacttagaaaattgagaccaggatacaccacctctggtatcagggagtaccag 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 atatgttgacttagaaaattgagaccaggatacaccacctctggtatcagggagtaccag 317
Query: 119 actggtggcagcctccaggaactcgcctcaggactcagttcaacatgcagcaatttgttt 178
|||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||
Sbjct: 318 actggtggcagcctccaggaacgcgcctcgggacgcagttcaacatgcagcaatttgttt 377
Query: 179 tatttccaatacaaatatctattgccattctgtaactctgatagcaaggctgcagctgtg 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tatttccaatacaaatatctattgccattctgtaactctgatagcaaggctgcagctgtg 437
Query: 239 gttatcccctcctgattaccacagtgcaaacgtgaaaatta 279
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gttatcccctcctgattaccacagtgcaaacgtgaaaatta 478
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 678
Length adjustment: 9
Effective length of query: 270
Effective length of database: 669
Effective search space: 180630
Effective search space used: 180630
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
