BAC Information

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BAC

Clone NameMSMg01-236H11
Chromosome3 (Build37)
Map Location 53,261,356 - 53,261,865
singlet/doubletsinglet
Overlap gene8030451K01Rik
Upstream geneLOC100039762, LOC100039832, Cog6, Lhfp, LOC100039808, LOC666413
Downstream gene2810046L04Rik, Stoml3, Frem2, Ppia-ps3_416.1, LOC621155, Ufm1, EG666444, LOC100039937, Trpc4, Postn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-236H11.T7 (MSMg01no236_h11.b1)MSMg01-236H11.TJ (MSMg01no236_h11.g1)
ACCAG401711AG401712
length727785
length of high quality
(start - end)
504 (70 - 573)161 (178 - 338)
definitionCHROMAT_FILE: MSMg01no236_h11.b1 PHD_FILE: MSMg01no236_h11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:02 2005CHROMAT_FILE: MSMg01no236_h11.g1 PHD_FILE: MSMg01no236_h11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGAATCCGCGGA
ATTCCATCGATTTCCGGAGACTCGACCTTGGGGAACAGAATTTAGCATTA
CAATATATAGCCAGGGACCAAACCTCCACCTAAATCACATTGGTGGGATT
ACCAACCACCAGGAGATCCTCACAGGGACCGAGGTGGTGTGAAATTTAAA
GAACTTCTGGAGATTTTCTGTCCTGTTTATTGTGGGGAAGTCAGGAAGCG
AGATCCCTGGCAGGCCTCCTGCAGGCTAACAGTAAGGCTCTAACTAGGCC
CTCTGTGGCCACCACAGCATCTAGTCTGTTCCTAACAGAACAATTAAACT
CATCTGTGACAAAGACTTTCAAGCTAGGATAGTAACCAGAAGGCAAACCG
GAATTGGAGAGGCACAGCAGAGTTCCTGAAGAGGCCACCCTTGGCTGAGC
TGTAGACAGGGCCAGCAGGGCCAGTGGTGTCCAGGTCCATGGAAGCCCTG
AGCTGGAATGGAAACAGCATGGCTTTCTCAGCGGCCAGAAGGAAAGGTGG
CGGCCATTGAAGCTGCTCTGAGGATCCCAGAGTTGTGCTCTGCTAGCAGT
CTGAGGGGCTTTCAGGAAGTCAGAGATAGTCCATATGCGTCCCAAAATAT
CGCAAAATGCTGGTAGCTATTTCTGGCAAGCCTGTCCTTCGGCGTGAACT
TGGTCTCCAAACAGGAGGTAAAGCAGG
CTTCTTCCCTTCTTTCCTTTGTTTTATTGGGTTTTTTTTTTTTCCNAATA
CTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTTCCACAAAAATTCTCTCACCTGTCTTGGAGTAGCCGGAG
TTGGTATTTGAGTCATTTTCCCCCTTCTAGCCTCTGTCAGCCACCGTTTT
CCATCCCGGAGGGTATATCTCAAGTAGACCACTTCCATCTGACATACCTG
GGCTTTTTTAGCAGAGGACCGGTAACCCAACTCACCCAGTTCTGCTAGCA
ATCTCTTGGTCCCCTGCCAGCATTCTCTTCTGTGGTTGTAGCAAGGAGCA
GCATATTGAAGCAGAGTTTTTTTTTTGTTTTCAGCTCGGAAGGAGGCTAA
ACCTCGTTTTTTTTTTTTCCTCCCCCCCGCCGGGTGAGTTTTTGAACTCC
TGGGGTATTCACATCCCGGTCAAAAAGAAAAAGAATGTCCCGTGTTTGGA
TCTCTCCACTCAAAGACGAATATGTACTGTTTGGAGGGATGCAACTTCAG
GCAAAAGAAAGCATCTTTTAAATCTATTACCGCCCACTACTTTCGCTCCG
TATCCACCCACCTGATTAGGTTATTTTCACTACGATATGTTGGCTGACAC
ATCTTGGTATTTCTCATTGAATTTTTCTAAGTCTTGTTCTGTTCCGTTAT
TCTTTTCTGTGTCACCTTTTTTAACCGACAATAACCTAATACTTTTTGGT
TTCTTGGCTAGGTTATTTAAATACCTAAATGTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no236_h11.b1 MSMg01no236_h11.b1 CHROMAT_FILE:
MSMg01no236_h11.b1 PHD_FILE: MSMg01no236_h11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:02 2005
         (504 letters)



>mm_chr3_53261096_53262005
          Length = 910

 Score =  928 bits (480), Expect = 0.0
 Identities = 501/510 (98%), Gaps = 6/510 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   actcgaccttggggaacagaatttagcattacaatatatagccagggaccaaacctccac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 actcgaccttggggaacagaatttagcattacaatatatagccagggaccaaacctccac 711

                                                                       
Query: 61  ctaaatcacattggtgggattaccaacc--a--ccaggagatcctcacagggaccgaggt 116
           ||||||||||||||||||||||||||||  |  |||||||||||||||||||||||||||
Sbjct: 710 ctaaatcacattggtgggattaccaaccggaggccaggagatcctcacagggaccgaggt 651

                                                                       
Query: 117 ggtgtgaaatttaaagaacttctggagattttctgtcctgtttattgtggggaagtcagg 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 ggtgtgaaatttaaagaacttctggagattttctgtcctgtttattgtggggaagtcagg 591

                                                                       
Query: 177 aagc--gagatccctggcaggcctcctgcaggctaacagtaaggctctaactaggccctc 234
           ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 aagcgagagatccctggcaggcctcctgcaggctaacagtaaggctctaactaggccctc 531

                                                                       
Query: 235 tgtggccaccacagcatctagtctgttcctaacagaacaattaaactcatctgtgacaaa 294
           |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 tgtggccaccacagcagcaagtctgttcctaacagaacaattaaactcatctgtgacaaa 471

                                                                       
Query: 295 gactttcaagctaggatagtaaccagaaggcaaaccggaattggagaggcacagcagagt 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 gactttcaagctaggatagtaaccagaaggcaaaccggaattggagaggcacagcagagt 411

                                                                       
Query: 355 tcctgaagaggccacccttggctgagctgtagacagggccagcagggccagtggtgtcca 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 tcctgaagaggccacccttggctgagctgtagacagggccagcagggccagtggtgtcca 351

                                                                       
Query: 415 ggtccatggaagccctgagctggaatggaaacagcatggctttctcagcggccagaagga 474
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 ggtccatgggagccctgagctggaatggaaacagcatggctttctcagcggccagaagga 291

                                         
Query: 475 aaggtggcggccattgaagctgctctgagg 504
           ||||||||||||||||||||||||||||||
Sbjct: 290 aaggtggcggccattgaagctgctctgagg 261


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 910
Length adjustment: 10
Effective length of query: 494
Effective length of database: 900
Effective search space:   444600
Effective search space used:   444600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)