BAC Information

Click to search

BAC

Clone NameMSMg01-236J20
Chromosome3 (Build37)
Map Location 14,425,177 - 14,425,492
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039861, 0710005M24Rik, LOC100041679, LOC100041667, LOC100039882, EG622229
Downstream geneLOC668062, Slc7a12, LOC668068, Lrrcc1, E2f5, 1810022K09Rik, LOC100039929, Car13, EG545507, Car1, LOC100041785, Car3, Car2, EG634323, LOC100039985, LOC751864, Sirpb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-236J20.T7 (MSMg01no236_j20.b1)MSMg01-236J20.TJ (MSMg01no236_j20.g1)
ACCAG401816AG401817
length728730
length of high quality
(start - end)
320 (45 - 364)337 (388 - 724)
definitionCHROMAT_FILE: MSMg01no236_j20.b1 PHD_FILE: MSMg01no236_j20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:13 2005CHROMAT_FILE: MSMg01no236_j20.g1 PHD_FILE: MSMg01no236_j20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGGTCTTCTCGCTTGGAGGAAAAGCCCATAGCCTGCTTAACAATCA
CACTGTTCTTGAATATTATTTTCCCCACTAATCTAAATATTTGACATTAG
GAACATAAATAAACACGTTATAAAATGTCAAATATATTGCAAAAATATTT
CAAATTAATCAGTAACAGTAAAAGTTTGGTTAAAATTAACTAGTATAGTT
ATATTTTTATGTTACAATACTTTTTTTGCATGTTCATTTGATGAAATAAT
TTTATTACTTTTTGTATTTTGTCACAATAGTTACATACTTATCAGTGTGT
GTATTTGAAAAATTATTGTGCTGCACCTTCGCTTTATAGCTCATCTCTGA
CCTAAAACACAGAGCTTATTATTCAGAAGAATAAATGCTTTCAGAATTTG
AGTACAGTCCTTTCAGTGAATTTTATATTTATTTAGTTTATGAATATGTG
TATACTATACCTATCTTCAGACACACCAGAAGAGGGAGGCAGATCTCATC
ACAAATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAAGACC
TTTAGGAGAGCTGGAAGTGCTCTTAACTGTTGTGTCATCTTTCAAGTCCC
CCTTTCATTGAATTTTAGATTTTCAATTGCATGTCAAATTCTTTATGACA
AGATAGAGTTGGATATGGCCTTATGAGG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCATATAAAACCAGAGACACTGAACT
TTACAGAGGAGAAAATGAGCTTAAGCCCCGAAAATATGGGCACAGCTGAT
AAATTCCTAAACAGAACAGCAACGGCTTATGCTGTAAGATCAAGAGTCAT
TTGGTACCTCATAAAATTGGAAAGCTTCTGTAAGGCAAAAGACACTGTCA
ATAAGACAAAAAGGCCACCAGAAGATTGGGAAAGGATTTTTTTACCAATC
CTAAATCTGATAGGGGACTAATATCCAATATATACAAAGAGCTCAAGAAG
CTGGACTCCAGAAATTATTTTTAAAAACCCTACCCCATGGGTCACAGAGC
TAAACAAAGAATTCTCAACTGAGGAATACCAAATGGCTGAGAAGCACCTA
AAAAAGTGTTCAACATCCTTAATAATCAGGGGAATGCAAATCAAAACACA
CCTGAGATTCCACTTCACAACAGTCAGCTTGTACAACCATTCTGGAAATC
AGTCTGGTAGTTCCTCAGAAAATTGGACATAGTACTACCAGCAATACCTC
TCCTGGGCATATACCCAGAAGATGTTCCAACTGGTAATAAGGAAACATGC
TCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGA
GCCCATATGTCTCTCAACAAAGGAATGGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no236_j20.b1 MSMg01no236_j20.b1 CHROMAT_FILE:
MSMg01no236_j20.b1 PHD_FILE: MSMg01no236_j20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:13 2005
         (320 letters)



>mm_chr3_14424973_14425692
          Length = 720

 Score =  557 bits (288), Expect = e-163
 Identities = 309/316 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaggtcttctcgcttggaggaaaagcccatagcctgcttaacaatcacactgttc 64
           ||||||||||||||  | |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 520 gaattcaggtcttcaggtttggtggaaaagcccatagcctgcttaacaatcacactgttc 461

                                                                       
Query: 65  ttgaatattattttccccactaatctaaatatttgacattaggaacataaataaacacgt 124
            ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 ctgaatattactttcctcactaatctaaatatttgacattaggaacataaataaacacgt 401

                                                                       
Query: 125 tataaaatgtcaaatatattgcaaaaatatttcaaattaatcagtaacagtaaaagtttg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tataaaatgtcaaatatattgcaaaaatatttcaaattaatcagtaacagtaaaagtttg 341

                                                                       
Query: 185 gttaaaattaactagtatagttatatttttatgttacaatactttttttgcatgttcatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 gttaaaattaactagtatagttatatttttatgttacaatactttttttgcatgttcatt 281

                                                                       
Query: 245 tgatgaaataattttattactttttgtattttgtcacaatagttacatacttatcagtgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 tgatgaaataattttattactttttgtattttgtcacaatagttacatacttatcagtgt 221

                           
Query: 305 gtgtatttgaaaaatt 320
           ||||||||||||||||
Sbjct: 220 gtgtatttgaaaaatt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)