BAC Information

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BAC

Clone NameMSMg01-236K06
Chromosome3 (Build37)
Map Location 38,654,072 - 38,799,565
singlet/doubletdoublet
Overlap geneFat4
Upstream gene4930556A17Rik, LOC665811, EG665821, LOC100041366, LOC100040785, LOC665838, Ankrd50, LOC100041378, LOC665855, LOC100040824
Downstream geneLOC100041432, LOC100040853, LOC100041443, LOC100041458
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-236K06.T7 (MSMg01no236_k06.b1)MSMg01-236K06.TJ (MSMg01no236_k06.g1)
ACCAG401836AG401837
length743732
length of high quality
(start - end)
274 (46 - 319)352 (381 - 732)
definitionCHROMAT_FILE: MSMg01no236_k06.b1 PHD_FILE: MSMg01no236_k06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:15 2005CHROMAT_FILE: MSMg01no236_k06.g1 PHD_FILE: MSMg01no236_k06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,799,312 - 38,799,565)(38,654,072 - 38,654,423)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACCTGTTACCAACCTCTTCCCAGTCACAAACCAGCTGCCAGAATT
TCACTTCTGCAATTTACCATGTCCATGGTGTGAGATGATGGAGAGAAGCT
GGTGGGGGTGGGGGAAGTAATTAGTCTAAGAAACAGAGAGAGACAAAGTT
ACAGATGTCAGTGACTTAGAAGCCCAGCGAAGGGAGCATTTAACAGAAGC
AAAATAAAGTCTATGTCAGTAGCCTTTGAGGAGAATTAGATAATGACAAT
GTGATGAACACTGTGTCCATCTTGTTCACCAGGAGACCCCCTTAGCAGTC
ACCACCCAGTCTCTCAGCTGACGAGTCCCCGGACTGTGTGTCCTTCTAAT
CATGGCGGAGGACAAGCCACAGAGAGGAAACCTCCACTCTGAATAAGGCT
CACCAGCACAAATCTTTGATAAAGTTTTTTCTTCCCTTGGGTACCCTCAT
GCCTACCCCCTTGGCATGACACCTATAGGGACCGAAGTTTTACCACCCGC
CACAGGAACCGATTCTACGGTCTTTGACCATGATTTTGATCTCTCGACGT
TTGTCACTACCCCAGCCGACCGGGCCTTTAAAGCGTGCCCCTTGGCTCTG
CCTATCTCCTTTTTTCTTCTTATCCCTGACATATTTCTTTCAACCCTTCC
TCTAACCCCAGCCCTTTATATCCCATTTCTCCTTTCGCCTCCT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGTGCTTTCTTTGTGGAAATACAC
TTTGTGCTCCACTCCACAGCGACTCGTCATTTGATATCTAATGAGCTAGA
AAACAAACGGCCGGATTTCTCCCAGTTATACCACCACATAACAAATGTCC
TTGACTCAGAACACACTGTTCTCTCAGCTCTTAGGTTGCTAGAGCCTTGT
AGGGATTCATAAAAATGACCATAGACAATATTAATAATATGCTTGGAGCA
ATGAGGCTCTCTTTGCACATATATTATGCAAATGGGAGAAAACTCCACAG
GGAAGCGTTGATTTGTTTGCCCCGCCCCCCGCAGTTAAATTAAGATAAAG
GCGAATTAAGGACGGAATTGTGAACACTGCAAGCATTGTGGATGATCCTG
CTTGTAAAATCACATTAGATGGACTTGGACTGGGGGAGGTTTGCTGACAG
GTAAGTGCCTTCGTATCAGCTTCTCAAAATCACCCAGGTTGTCTGAACCT
CAGTCCCAACCAACAAAACAAGTATGGCTCATATAACGTTAAATAAGCAG
CCCTTGGTTTCAATGATGTATGGAAAGGCAAGAACCAAATTTATACTTAC
AAAATATACATTCAAATACTTACATCGAGTAAATGTATTTAATTGCCTTG
TATGTATAAATGTGAATCCTTGGAGGCTTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no236_k06.b1 MSMg01no236_k06.b1 CHROMAT_FILE:
MSMg01no236_k06.b1 PHD_FILE: MSMg01no236_k06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:15 2005
         (274 letters)



>mm_chr3_38799092_38799765
          Length = 674

 Score =  476 bits (246), Expect = e-139
 Identities = 252/254 (99%)
 Strand = Plus / Minus

                                                                       
Query: 21  aacctcttcccagtcacaaaccagctgccagaatttcacttctgcaatttaccatgtcca 80
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 474 aacctcttcccagtcacaaaccagctgccagaatttcacttctgcaatttaccatgttca 415

                                                                       
Query: 81  tggtgtgagatgatggagagaagctggtgggggtgggggaagtaattagtctaagaaaca 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 tggtgtgagatgatggagagaagctggtgggggtgggggaagtaattagtctaagaaaca 355

                                                                       
Query: 141 gagagagacaaagttacagatgtcagtgacttagaagcccagcgaagggagcatttaaca 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 gagagagacaaagttacagatgtcagtgacttagaagcccagcgaagggagcatttaaca 295

                                                                       
Query: 201 gaagcaaaataaagtctatgtcagtagcctttgaggagaattagataatgacaatgtgat 260
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 gaagcaaaagaaagtctatgtcagtagcctttgaggagaattagataatgacaatgtgat 235

                         
Query: 261 gaacactgtgtcca 274
           ||||||||||||||
Sbjct: 234 gaacactgtgtcca 221


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space:   176225
Effective search space used:   176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no236_k06.g1 MSMg01no236_k06.g1 CHROMAT_FILE:
MSMg01no236_k06.g1 PHD_FILE: MSMg01no236_k06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:15 2005
         (352 letters)



>mm_chr3_38653872_38654623
          Length = 752

 Score =  681 bits (352), Expect = 0.0
 Identities = 352/352 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcagttaaattaagataaaggcgaattaaggacggaattgtgaacactgcaagcattgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcagttaaattaagataaaggcgaattaaggacggaattgtgaacactgcaagcattgtg 260

                                                                       
Query: 61  gatgatcctgcttgtaaaatcacattagatggacttggactgggggaggtttgctgacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatgatcctgcttgtaaaatcacattagatggacttggactgggggaggtttgctgacag 320

                                                                       
Query: 121 gtaagtgccttcgtatcagcttctcaaaatcacccaggttgtctgaacctcagtcccaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtaagtgccttcgtatcagcttctcaaaatcacccaggttgtctgaacctcagtcccaac 380

                                                                       
Query: 181 caacaaaacaagtatggctcatataacgttaaataagcagcccttggtttcaatgatgta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caacaaaacaagtatggctcatataacgttaaataagcagcccttggtttcaatgatgta 440

                                                                       
Query: 241 tggaaaggcaagaaccaaatttatacttacaaaatatacattcaaatacttacatcgagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggaaaggcaagaaccaaatttatacttacaaaatatacattcaaatacttacatcgagt 500

                                                               
Query: 301 aaatgtatttaattgccttgtatgtataaatgtgaatccttggaggctttgt 352
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaatgtatttaattgccttgtatgtataaatgtgaatccttggaggctttgt 552


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 752
Length adjustment: 9
Effective length of query: 343
Effective length of database: 743
Effective search space:   254849
Effective search space used:   254849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)