Query= MSMg01no236_l08.b1 MSMg01no236_l08.b1 CHROMAT_FILE:
MSMg01no236_l08.b1 PHD_FILE: MSMg01no236_l08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:20 2005
(680 letters)
>mm_chr3_117048761_117049839
Length = 1079
Score = 1094 bits (566), Expect = 0.0
Identities = 648/680 (95%), Gaps = 19/680 (2%)
Strand = Plus / Minus
Query: 6 gatggcaacatgctatcggaacagcagtaagatgtaatgggggcacaggattccaggaat 65
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 gatggcaacatgcgat-ggaacagcagtaagatgtaatgggggcacaggattccaggaat 652
Query: 66 ttagtggagcagaacccaattatagtcctggccatgcagacatcaagtagattgttgaag 125
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 ttagtggagcagaattcaattatagtcctggccatgcagacatcaagtagattgttgaag 592
Query: 126 tatctggggcaaagtctttattctaaaatataccataatattcccaaggaagtaattgaa 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 tatctggggcaaagtctttattctaaaatataccataatattcccaaggaagtaattgaa 532
Query: 186 attaaatcagacaagtaagtgaaaatatctaaataaaactcggcacccacatgtctctct 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 attaaatcagacaagtaagtgaaaatatctaaataaaactcggcacccacatgtctctct 472
Query: 246 tgaagtatgactatgctcgatgaattctgtttttagtcatagtacgattg-gatctagaa 304
||||||||||||||||||||||||||||||||||| ||| ||||| | || |||||||||
Sbjct: 471 tgaagtatgactatgctcgatgaattctgtttttattcaaagtac-aatgtgatctagaa 413
Query: 305 aggaccagtcatcaatgt-atgcaagtgaaatacttgtcataattagatgacaaggaaga 363
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 412 aggaccagtcatcaatgtga-gcaagtgaaatacttgtcataattagatgacaaggaaga 354
Query: 364 agtcaataaagaaagtgattaagagttaaaagcaaaggagtaggtgttttcaaaccatac 423
|| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 353 aggcagtaaagaaagtgattaagagttaaaagcaaaggggtaggtgttttcaaaccatac 294
Query: 424 aagttacctaagaggtccatttccatcatgggaagtgtagacattgttgcatattgggga 483
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 293 aagttacctaagaggtccatttccatgatgggaagtgtagacattgttgcatattgggga 234
Query: 484 taaggggcaaggtgcaactcaaacaaagcattccagagacta-atgttctcactgacttt 542
| |||||||||||||||||||||||||| |||||| | |||||||||||||||
Sbjct: 233 tgaggggcaaggtgcaactcaaacaaag--------agactaga-gttctcactgacttt 183
Query: 543 atgatggttgtacaatttatataatttatccacactgcca-tttttaaagcgta-agttg 600
|||||||||||||||||||||||||||||||||||||| | |||||||||| || | |||
Sbjct: 182 atgatggttgtacaatttatataatttatccacactgc-agtttttaaagcataca-ttg 125
Query: 601 aggatgccaacaaatactaagactacacaaagtttacattcaatttagcaacctattaag 660
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 aggatgccaacaaatacttagactacacaaagtttacattcaatttagcaacctattaag 65
Query: 661 atcaacacagcacctggcat 680
||||||||||||||||||||
Sbjct: 64 atcaacacagcacctggcat 45
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1079
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1069
Effective search space: 716230
Effective search space used: 716230
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no236_l08.g1 MSMg01no236_l08.g1 CHROMAT_FILE:
MSMg01no236_l08.g1 PHD_FILE: MSMg01no236_l08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:20 2005
(163 letters)
>mm_chr3_117002292_117002858
Length = 567
Score = 275 bits (142), Expect = 1e-78
Identities = 159/166 (95%), Gaps = 4/166 (2%)
Strand = Plus / Plus
Query: 1 aggttcctagcctttaattaaaaagctgagtactcttgagctgtgtttgactgacatcac 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggtccctagcctttaattaaaaagctgagtactcttgagctgtgtttgactgacatcac 260
Query: 61 tgggaggtctagtttttttttt---cctgggggg-ggggaataggttgggcagggtagat 116
|||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||
Sbjct: 261 tgggaggtctagtttttttttttttcctggggggagggggataggttgggcagggtagat 320
Query: 117 ctagaggagagagtaggtgccaggtaactaggagggatggagggag 162
|||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 ctagaggagagagtaggtgccagggaactaggagggatggagggag 366
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 163
Length of database: 567
Length adjustment: 8
Effective length of query: 155
Effective length of database: 559
Effective search space: 86645
Effective search space used: 86645
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
