Query= MSMg01no236_l18.b1 MSMg01no236_l18.b1 CHROMAT_FILE:
MSMg01no236_l18.b1 PHD_FILE: MSMg01no236_l18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:22 2005
(665 letters)
>mm_chr3_109853469_109854536
Length = 1068
Score = 1174 bits (607), Expect = 0.0
Identities = 649/665 (97%), Gaps = 5/665 (0%)
Strand = Plus / Minus
Query: 5 gaattctctgaaatgaccgaaggagataacaggaggccagagggagaagtgatgacaata 64
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 gaattctctgaaatgaaggaaggagataacaggaggccagagggagaagtgatgacaata 809
Query: 65 acttttaacagtttgcaggagcaaatgttattatccctttcttgggaatttgggggattt 124
||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 808 actattaacagtttg-aggagcaaatgttattatccctttcttgggaatttggaggattt 750
Query: 125 acgtctacaatgttattttaaaaggtttttactagagaaggaactcatagattttatttc 184
||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 749 acgtctataatgttattttaaaaggtttttactagagaaggaactcatagattgcatttc 690
Query: 185 caaacctctttgtggccaagtgccttatcatttttctccactctctaccttaccccctat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 689 caaacctctttgtggccaagtgccttatcatttttctccactctctaccttaccctctat 630
Query: 245 gtaacaataccttgt----attagtctcctttcggtcactgtagctaagtatctgagaag 300
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 gtaacaataccttgtattaattagtctcctttcggtcactgtagctaagtatctgagaag 570
Query: 301 gttgtcttaactaaggaagtacagacttaccatttcagaggctctgacatagttacttgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 gttgtcttaactaaggaagtacagacttaccatttcagaggctctgacatagttacttgg 510
Query: 361 tcatccctgtggactgtgctaaggcagaagatcatgtagtgactactcacctcatggtgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 tcatccctgtggactgtgctaaggcagaagatcatgtagtgactactcacctcatggtgg 450
Query: 421 acgagaaaaagatcaagagtaaaggggccttcgacaagataggcaagaaggtctccactg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 acgagaaaaagatcaagagtaaaggggccttcgacaagataggcaagaaggtctccactg 390
Query: 481 atcaacttttaccaattactctctagcatctggttcacccaattttccaatgatgccaac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 atcaacttttaccaattactctctagcatctggttcacccaattttccaatgatgccaac 330
Query: 541 aatgggtggatgcatcaatgcattagcccactgattaagacagatccttaatgatccaat 600
|||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 329 aatgcgtggatgcatcaatgcattaacccactgattaagatagatccttaatgatccaat 270
Query: 601 gctttcctaaaagcctttaggctggcatctgagccttttaacacatgagccattggggaa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 gctttcctaaaagcctttaggctggcatctgagccttttaacacatgagccattggggaa 210
Query: 661 gattt 665
|||||
Sbjct: 209 gattt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1068
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1058
Effective search space: 692990
Effective search space used: 692990
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no236_l18.g1 MSMg01no236_l18.g1 CHROMAT_FILE:
MSMg01no236_l18.g1 PHD_FILE: MSMg01no236_l18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:22 2005
(327 letters)
>mm_chr3_109745397_109746123
Length = 727
Score = 615 bits (318), Expect = e-180
Identities = 324/326 (99%)
Strand = Plus / Plus
Query: 1 aggaggctgtgtgaatcgtttgggtttacactcaaagccatcttgaaaaacagagagagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggaggctgtgtgaatcgtttgggtttacactcaaagccatcttgaaaaacagagagagt 260
Query: 61 tactgacatttgtgtctggctaatctttactcatattgacccttgaaagtcaaacatagg 120
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 261 tactgacatttgtgtctggctaatctttactcatattgaaccttgaaagtcaaatatagg 320
Query: 121 gaaggaagaagcagcattgtgtggcccacccacgctgttgctgcccagttttggaaatag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaggaagaagcagcattgtgtggcccacccacgctgttgctgcccagttttggaaatag 380
Query: 181 acatcactagctgtttgccaatttaaggcctttaaaaagattctagaactggcagattcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acatcactagctgtttgccaatttaaggcctttaaaaagattctagaactggcagattcc 440
Query: 241 cagagaagccctgatcctagagtacgctctaactgctaagaggtggtaccaccttcggca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagagaagccctgatcctagagtacgctctaactgctaagaggtggtaccaccttcggca 500
Query: 301 gacacctccctctttactttcacttg 326
||||||||||||||||||||||||||
Sbjct: 501 gacacctccctctttactttcacttg 526
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space: 228324
Effective search space used: 228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
