BAC Information

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BAC

Clone NameMSMg01-236L23
Chromosome3 (Build37)
Map Location 4,316,983 - 4,317,570
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039140, Hnf4g, EG383815, LOC100039157, LOC100039167, LOC667709
Downstream geneLOC620283, Zfhx4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-236L23.T7 (MSMg01no236_l23.b1)MSMg01-236L23.TJ (MSMg01no236_l23.g1)
ACCAG401914AG401915
length706787
length of high quality
(start - end)
592 (21 - 612)292 (134 - 425)
definitionCHROMAT_FILE: MSMg01no236_l23.b1 PHD_FILE: MSMg01no236_l23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:23 2005CHROMAT_FILE: MSMg01no236_l23.g1 PHD_FILE: MSMg01no236_l23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GACTCCTATAGTTCGAGGATCCGCGGAATTCTATCTTTCTCTGCTCCCCA
TCCTTTTGAGGTGTATACTTTGGCACTTCTTTGAACATTTGTCTCTTAAT
GCCGTTAAAGTAAAAATCAGAACATTCAGATATACAATGTGCAGAGACAG
TCAAGGAGCTATTTAGGTGCTCAAAATAGGCTGTCTTCAATTTCACCTAC
TAGACTGTTTTTGTTATTGTTGTTTTTATTTATTTTGCTGTTATTCTCTG
CCAGCACCAATCATACCCACTAAGAGCTTAATAAATATTTTCTTCTCTCT
GAGTATATGTGTTTATGTGTATATACATATTCATGAAGTCAGACTTTGAG
TATTATACCTCAGGAACTGCCCTTCTTAATTTTTAGATGTAGTTTCTCAT
TGGACTGTAACTCATGGCTGACCAAATAAACTTGAGGACAACTAATCTTT
CTTTACCAGAACCAGGATTTCAGATGTGTAGGCATTTCATGTAGGTTTGG
GGATCAGATACAAAATGATATATGTGGCTGACTATTTCTGTACCAACTGA
ATTATCTTTTCAGCCTCATTTTAACTAATATTTAACAATGAGCATTCAAC
TACAGCAAAGTTAGCTTCTCACATTTTTAAGCGGCAAAGGTTTCCCAAGG
ATGACAAACCATTATGATATCTTGACACTATACAGAATCTTTGGTATCTC
AGAAAA
CCTTTCCCCCTTCCCTCCTCTTTCTATACTCTTCCTTTTTTTATTTCNCC
CNNTTCTCCATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCACCAACAGCTCAA
TAAAAAATGTAAGTCAATTCCAGAACTGGAGCGCCCTATTGTTATAATAC
AGTTGTGACTCTTTCCCCCATTATTTGGCAATTTGCTTTAGATTGCCTTT
TTAGGAAGTTTCTATTGTATTAGGTGTCCGTGTTACCCATCATGTGGCTG
GTAATTTTAACTGTCTTTTTATGTTTCCTCCCCCAATTTTCTCTCTCTTC
TCTTTCTTCACTTAATTCTCCAACTTAAGCACTGTCCCACCCATTCAATC
TCTTGTATTTCTCTTTGCATAATGTTTTTTATTTCCTCCCCCTAGTCTCT
TACCCTCTACCTACTCTTGGAGGTTGTATGAGTTGCAACTTGAATATTAT
GGACTTTACAGCTAATATCGATAGATAAGTGAATATATTTCATTTTTGCC
TTTTAAAGTCTTTAATACCTCTTTCAGATTTTTCACATTCCTATGCCCAA
CCTAAAATTTCACGACGCCATTTATTTACTTTTCAACCATCAAGTAATAT
TTGACCGCCAAATGTACCATATCCCCTTACTCCTCTATTGAGGAACATCT
ACATTGTTTTCCCTTCCCGCCTATTATTACTACAACAGCACTGAACACAG
TTTTGTTAGAGTCCCTGTGGTAAGATGAAGCATCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no236_l23.b1 MSMg01no236_l23.b1 CHROMAT_FILE:
MSMg01no236_l23.b1 PHD_FILE: MSMg01no236_l23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:23 2005
         (592 letters)



>mm_chr3_4316779_4317770
          Length = 992

 Score = 1044 bits (540), Expect = 0.0
 Identities = 576/588 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   ggaattctatctttctctgctccccatccttttgaggtgtatactttggcacttctttga 64
           ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct: 792 ggaattctatctttctctgatccccatccttttgagatgtatactttggcacttctttga 733

                                                                       
Query: 65  acatttgtctcttaatgccgttaaagtaaaaatcagaacattcagatatacaatgtgcag 124
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 acatttgtctcttaatgttgttaaagtaaaaatcagaacattcagatatacaatgtgcag 673

                                                                       
Query: 125 agacagtcaaggagctatttaggtgctcaaaataggctgtcttcaatttcacctactaga 184
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 agacagtcaaggagctctttaggtgctcaaaataggctgtcttcaatttcacctactaga 613

                                                                       
Query: 185 ctgtttttgttattgttgtttttatttattttgctgttattctctgccagcaccaatcat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 ctgtttttgttattgttgtttttatttattttgctgttattctctgccagcaccaatcat 553

                                                                       
Query: 245 acccactaagagcttaataaatattttcttctctctgagtatatgtgtttatgtgtatat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 acccactaagagcttaataaatattttcttctctctgagtatatgtgtttatgtgtatat 493

                                                                       
Query: 305 acatattcatgaagtcagactttgagtattatacctcaggaactgcccttcttaattttt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 492 acatattcatgaagtcagactttgagtattatacctcaggaactgcccttcttaattttg 433

                                                                       
Query: 365 agatgtagtttctcattggactgtaactcatggctgaccaaataaacttgaggacaacta 424
           ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 432 agatgtagtttctcatttgactgtaactcatggctgaccaaataaacttgagaacaacta 373

                                                                       
Query: 425 atctttctttaccagaaccaggatttcagatgtgtaggcatttcatgtaggtttggggat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 atctttctttaccagaaccaggatttcagatgtgtaggcatttcatgtaggtttggggat 313

                                                                       
Query: 485 cagatacaaaatgatatatgtggctgactatttctgtaccaactgaattatcttttcagc 544
           || ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct: 312 caaatacaaaatgatatatgtggctgacaatttctgtaccaactgaattatcttctcagc 253

                                                           
Query: 545 ctcattttaactaatatttaacaatgagcattcaactacagcaaagtt 592
           |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 252 ctcattttaactaatatttaacaatgagtattcaactacagcaaagtt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space:   571524
Effective search space used:   571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)