BAC Information

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BAC

Clone NameMSMg01-236P04
Chromosome3 (Build37)
Map Location 42,098,074 - 42,098,657
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
Downstream geneLOC100039204, LOC100039219, LOC677788
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-236P04.T7 (MSMg01no236_p04.b1)MSMg01-236P04.TJ (MSMg01no236_p04.g1)
ACCAG402053AG402054
length709713
length of high quality
(start - end)
585 (125 - 709)609 (77 - 685)
definitionCHROMAT_FILE: MSMg01no236_p04.b1 PHD_FILE: MSMg01no236_p04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:38 2005CHROMAT_FILE: MSMg01no236_p04.g1 PHD_FILE: MSMg01no236_p04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTAAATGTGTGCAGGTACATATATTATCCAGTTTGACATTTTATTGG
GTCTCTATACACAGGCACAGGTCCCGAGCTGAGCAGATGAAGCAAGTCAA
ATATGTGGCAGGTTTTCTTGGTAGCTAACATGAGGCCCTACTCTACCCTT
TCATATTTAATCCCAGGAAAGTATTAAGGAAATCATAAAGAACAGCATGT
TCTCAAAGAGTCAAGGTCAAAGTCAAGTTTATTTCAATATGTTGACTGTA
CTTCTCTGCTTTCATAGGAATCATTATTATGGAGTACAGAAGTCTGCCTG
CTGTCAAGAATTTTATGAATGAAAAATTGATTAACTTTTTATTTTAATCA
ATAAGTTTATTTTAATCAATAAGGTTTTAGTGTCAAACAGTTAAATGTCA
ACCTCCAAGCATCTAGAAAGAAACAATAAGTGAAATTAAATGTTAAGAAC
TGTTCTCTTGGTAACTGAGATTTAATTCAGATATGTTAAAACTTGTTACA
GCTTGAGGGCCTATTGCACATCCACAGGGCCACAGGTTTTTACTGCCTGA
CCAACTGTTGGAGATGCTGAGACTTGAATCCAGGTCTTGCATATATTAGA
CAAGTGATCTACCTGTTCTATAGCTCTATCCCTTCAAGATAGTTACTAGA
ATCAAGGAT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCT
GAGAAGCACCTGAAAAAATGCTCAGCATCCTTAATCATCAGAGAAATGCA
AATCAAAACAACCCTGAGATTCGATCTTACACCAGTCAGAATGGCTAAGA
TAAAAAATTCAGGTGACAGCAGATGCTGGCCAGAATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGTTTGCAAGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGAAAATTCGACATAGTACAACAGGAGGATC
CTGCAATACCTCTCCTTGGCATATATCCAGAAGATGTCCCCACTGGTAAG
AAGAACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAAAAAA
TGTGGTACATTTACACAATGGAGCACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGGCAAATGGATTGACCTGGAGAGCATCATCCTGAG
TGAGGTAACACAATCACAAAAGAACTCACACAATATGTACTCACTGATAA
GTGGATATTAGCCCAGAAACTTAGTATACCTGAGATATAAGATGCAATTT
GCAAAACACATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no236_p04.b1 MSMg01no236_p04.b1 CHROMAT_FILE:
MSMg01no236_p04.b1 PHD_FILE: MSMg01no236_p04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:38 2005
         (585 letters)



>mm_chr3_42097873_42098857
          Length = 985

 Score = 1098 bits (568), Expect = 0.0
 Identities = 580/584 (99%)
 Strand = Plus / Minus

                                                                       
Query: 2   gagctgagcagatgaagcaagtcaaatatgtggcaggttttcttggtagctaacatgagg 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 gagctgagcagatgaagcaagtcaaatatgtggcaggttttcttggtagctaacatgagg 726

                                                                       
Query: 62  ccctactctaccctttcatatttaatcccaggaaagtattaaggaaatcataaagaacag 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 ccctactctaccctttcatatttaatcccaggaaagtattaaggaaatcataaagaacag 666

                                                                       
Query: 122 catgttctcaaagagtcaaggtcaaagtcaagtttatttcaatatgttgactgtacttct 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 catgttctcaaagagtcaaggtcaaagtcaagtttatttcaatatgttgactgtacttct 606

                                                                       
Query: 182 ctgctttcataggaatcattattatggagtacagaagtctgcctgctgtcaagaatttta 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ctgctttcataggaatcattattatggagtacagaagtctgcctgctgtcaagaatttta 546

                                                                       
Query: 242 tgaatgaaaaattgattaactttttattttaatcaataagtttattttaatcaataaggt 301
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 tgaatgaaaaattgatcaactttttattttaatcaataagtttattttaatcaataaggt 486

                                                                       
Query: 302 tttagtgtcaaacagttaaatgtcaacctccaagcatctagaaagaaacaataagtgaaa 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tttagtgtcaaacagttaaatgtcaacctccaagcatctagaaagaaacaataagtgaaa 426

                                                                       
Query: 362 ttaaatgttaagaactgttctcttggtaactgagatttaattcagatatgttaaaacttg 421
           ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 425 ttaaatgctaagaactgttctcttggtaactgggatttaattcagatatgttaaaacttg 366

                                                                       
Query: 422 ttacagcttgagggcctattgcacatccacagggccacaggtttttactgcctgaccaac 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ttacagcttgagggcctattgcacatccacagggccacaggtttttactgcctgaccaac 306

                                                                       
Query: 482 tgttggagatgctgagacttgaatccaggtcttgcatatattagacaagtgatctacctg 541
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 305 tgttggagatgctgagacttgaatccaggccttgcatatattagacaagtgatctacctg 246

                                                       
Query: 542 ttctatagctctatcccttcaagatagttactagaatcaaggat 585
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ttctatagctctatcccttcaagatagttactagaatcaaggat 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space:   560625
Effective search space used:   560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)