Query= MSMg01no236_p19.b1 MSMg01no236_p19.b1 CHROMAT_FILE:
MSMg01no236_p19.b1 PHD_FILE: MSMg01no236_p19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:41 2005
(438 letters)
>mm_chr3_98061228_98062063
Length = 836
Score = 656 bits (339), Expect = 0.0
Identities = 365/375 (97%), Gaps = 6/375 (1%)
Strand = Plus / Minus
Query: 5 gaattccatacagactaccaagactggatgtgcatggtttaggatgtgtaggaagcaggt 64
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gaattccatacagactagaaagactggatgtgcatggtttaggatgtgtaggaagcaggt 314
Query: 65 gccctctggggagtgagatagtggcaggttgttgttttgccagttgtccaagagtgaagt 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 313 gccctctggggagtgagatagtggcaggttgttgttttgccagttgtccaagagtgaa-t 255
Query: 125 gggcagacactgaagggagaaaagtgggcccaactttctaaaaaaatattttatataatt 184
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 gggcaaacactgaagggag-aaagtgggcccaactttctaaaaaaatattttatataatt 196
Query: 185 atatatatat---t-atatgttacatataatatataataaatatatatataataaaaata 240
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 atatatatatatataatatgttacatataatatataataaatatatatataataaaaata 136
Query: 241 atttttgaaattaaagcataatgatgttattccttcccccctttacctttcccacacaca 300
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 135 atttttgaaattaaagcataatgatattattccttcccccctttacctttcccacacaca 76
Query: 301 gctcatttactctctctcaaattcatgatctctatttggttttgctttttaactttcatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75 gctcatttactctctctcaaattcatgatctctatttggttttgctttttaactttcatt 16
Query: 361 ttgcgtgtgagtgtt 375
|||||||||||||||
Sbjct: 15 ttgcgtgtgagtgtt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 836
Length adjustment: 9
Effective length of query: 429
Effective length of database: 827
Effective search space: 354783
Effective search space used: 354783
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no236_p19.g1 MSMg01no236_p19.g1 CHROMAT_FILE:
MSMg01no236_p19.g1 PHD_FILE: MSMg01no236_p19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:41 2005
(303 letters)
>mm_chr3_98010442_98011143
Length = 702
Score = 520 bits (269), Expect = e-152
Identities = 299/321 (93%), Gaps = 19/321 (5%)
Strand = Plus / Plus
Query: 1 caggctaacctgtgatacacgagactccatcagacaaacaaaccaaaaagaaagaagaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 181 caggctaacctgtgatacacgagactccatcagacaaacaaaccaaaaagaaaaaagaag 240
Query: 61 aaaaaatccacttgtgggttgaccttttcttaagcaatgaaaaaaaaaaa---------- 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aaaaaatccacttgtgggttgaccttttcttaagcaatgaaaaaaaaaaaaaatgaatga 300
Query: 111 ---------cctataaatccatctctcaaagtaaatggctagtgttcatttcctattttt 161
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aaaaaaaaccctataaatccatctctcaaagtaaatggctagtgttcatttcctattttt 360
Query: 162 aaaagaaaatttatctactatttattcaagagataagacatgtttcaaacttcaaaatta 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aaaagaaaatttatctactatttattcaagagataagacatgtttcaaacttcaaaatta 420
Query: 222 agaggcatgagaacattaagggacataaatatctcccagacttgaaggtaaatgatcata 281
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 agaggcatgagaacattgagggacataaatatctcccagacttgaaggtaaatgatcata 480
Query: 282 atctctttcttatcttcactg 302
|||||||||||||||||||||
Sbjct: 481 atctctttcttatcttcactg 501
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 702
Length adjustment: 9
Effective length of query: 294
Effective length of database: 693
Effective search space: 203742
Effective search space used: 203742
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
