BAC Information

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BAC

Clone NameMSMg01-237C18
Chromosome3 (Build37)
Map Location 3,180,828 - 3,181,066
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC667655, LOC100039140, Hnf4g, EG383815, LOC100039157, LOC100039167
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237C18.T7 (MSMg01no237_c18.b1)MSMg01-237C18.TJ (MSMg01no237_c18.g1)
ACCAG402200AG402201
length753765
length of high quality
(start - end)
239 (118 - 356)587 (77 - 663)
definitionCHROMAT_FILE: MSMg01no237_c18.b1 PHD_FILE: MSMg01no237_c18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:55 2005CHROMAT_FILE: MSMg01no237_c18.g1 PHD_FILE: MSMg01no237_c18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:55 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTAG
TATCTGAGAATGGACTTGGCAATTGCCAAATCAGCCAGGAGGTGCTGTTT
CTATTCGGGCTGACCCATGTTTGTTTCCTACTGTTTTCAAATAACACCTG
TGCTACTCATGACTATTTCCTTCTGGATTTTTAAATTAGTGTTGTGGGTT
AGTTGTTTAATTTTGATTTTAGGAAACTATTTTTGGAGATAGGATGGAAC
ATACTTATCCACTAGTGGGTGTCTGATGAGGATATAAGAGTTCATTTTAA
CCCAGAGATTAATAAACAAAAAAAAAAATGGGAGGGCTTAATTTTGGCTC
ATAGTTTTTGAAACCACCCCCCGCGGTTTCTTGGCCCCCATCTCCTTGGG
TAGAAACATTCTGACATGAAAACAGAATCATCAGAAGTGAAAGCAGCAGT
AGTTCTAGCTTTTATCAACCCGGCAGCACCAGATATTAAAACCAAACTCC
AAAGCATTGAGAGTGCAGAGGAGAAGCAGATGAGGGCAGAAAAAGTTAGA
GTAAAGAGAAATTAAAGAGAAGAAGCACACAGGAACCAAGGAGCAGCCTG
AGACAGGATTTTTCTGGATTCTATCCGTGCCCAGAGATGAGCCTGTACTT
CAGCTCTCTATACCCAAATTCCACCAGAAAGAGCTGGTCCTCTAAGAGTG
CTGACATACTTGTGAGCACAGGTGAGACCAGCAATTCTACACAATTTCTA
GGC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTACCTGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAATGTTCAACCCCCTTAATCATCAGGGAAATGCA
TATCAAAATAACCCTGAGATTCCACCTCACACCAGTAAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGGGGA
ACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATC
CATCAATACCTCTCCTGTTTATATATCCCGAAGATGCCCCAACCATTAAG
AAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAA
TGTGGTACATCTACACACTGGAGTACTACTCATCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGCCAAATGGATGGACTTGGAGGGCATCATCCTGAG
TGAGGTAACACATTCACAAAGGAACTCACACAATATATACTCACTGATAA
GTGGATATTAGGCCCAAACCTAGGATACCCAAGATATAAGATACAATTTG
CTAAACACATGAAACTCAAGAAGAATGAAGACTGAAGTGTGGACACTATG
CCCCTCCTTAGAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_c18.b1 MSMg01no237_c18.b1 CHROMAT_FILE:
MSMg01no237_c18.b1 PHD_FILE: MSMg01no237_c18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:55 2005
         (239 letters)



>mm_chr3_3180628_3181266
          Length = 639

 Score =  284 bits (147), Expect = 2e-81
 Identities = 217/245 (88%), Gaps = 12/245 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtttgtttcctactgttttcaaataacacctgtgctactcatgactatttccttctgg- 59
           |||||||||  ||||||| ||||||||||||| ||||||||||||||||||| |||||| 
Sbjct: 201 tgtttgttttgtactgttgtcaaataacacctttgctactcatgactatttcattctgga 260

                                                                       
Query: 60  atttttaaattagtgttgtgggttagttgtttaattttgattttaggaaactatttttgg 119
           |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 atttttaaattagttttgtgggttagttgtttaatattgattttaggaaactatttttgg 320

                                                                       
Query: 120 agataggatggaacatacttatccactagtgggtgtctgatgaggatataagagttcatt 179
           |||||||| ||| || | ||||||||||||||||||| |||||||||||||||| |||||
Sbjct: 321 agataggaaggaccaaaattatccactagtgggtgtcagatgaggatataagagctcatt 380

                                                                       
Query: 180 ttaaccca--gagattaataaacaaaaaaaaaaat---gggagggcttaattttggctca 234
           | |||  |  || |||| ||||||||||||    |   ||||||||||||||||||||||
Sbjct: 381 tgaac--aatgaaattattaaacaaaaaaa----tcttgggagggcttaattttggctca 434

                
Query: 235 tagtt 239
           |||||
Sbjct: 435 tagtt 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)