BAC Information

Click to search

BAC

Clone NameMSMg01-237E21
Chromosome3 (Build37)
Map Location 31,855,057 - 32,015,833
singlet/doubletdoublet
Overlap geneKcnmb2
Upstream genePhc3, LOC100040809, Prkci, Skil, Cldn11, Slc7a14, LOC625125
Downstream geneLOC665514, Zmat3, 4930429B21Rik, Pik3ca, Kcnmb3, Zfp639, Mfn1, Gnb4, LOC100040977, Actl6a, Mrpl47, Ndufb5, Usp13, Pex2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237E21.T7 (MSMg01no237_e21.b1)MSMg01-237E21.TJ (MSMg01no237_e21.g1)
ACCAG402290AG402291
length760765
length of high quality
(start - end)
364 (129 - 492)311 (444 - 754)
definitionCHROMAT_FILE: MSMg01no237_e21.b1 PHD_FILE: MSMg01no237_e21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:06 2005CHROMAT_FILE: MSMg01no237_e21.g1 PHD_FILE: MSMg01no237_e21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,855,057 - 31,855,419)(32,015,523 - 32,015,833)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCCAGGGTTTCTCCAGACATGTGCCTTTTTCATCGTTTTTCTTAA
TAGTCCAAGTAACGTGTTCTCTGCACCTGTGCCTACTAGATGTACTATTG
CTAACACATGATTGAATAATTTTCTCTATAGTTAAGTGCATAGTATATCA
TCCTTCCTATGTTTGCAGTAAAATATGCCAATCTCTTCTCCTATGATTTG
TTGACAAACTTTGAATGATTCTCCTATATCTTTTTCAGTAACACATATTT
CTATGTCTTAAATTCTACTTCACCTTGTTTTTATTTTGGGTCCTTTGGGA
GAAGGCAGTCTTTATTTTCTCCACACATATATCTAACAATGCTCCCTTCT
TCTTTGGCTGATCCGAAATGTCGTATCAGTTGTGCAAGAGAGCAGTGTAG
TAAAGGACATTATCCCATCCCACGCAACAGGGTAGCATAGCAGAGGGTAG
TGCCCTATCCTGTCTGTTCCCTTGGTCTGTGTTTATCTCTCTGTTATACC
ATTGGCATGGCAAGTTTAATTAGCAGGCTACATGTTCCAGGAAAACTCTT
TCCTATATACCTACATTAATCTGTTTTTAAGCAGATTATTACAGAATTAT
TGGATAGAGAAGGGCATAACTAAGACTCTTGAATATTTTTTTATCTCAAT
TTTATTTTAATTAGGCATTTTCTTCATTCAACTTTCCAATGCTATTCCCA
AATTGTCCTC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAAGATACTGAAATGGGTAAGATGC
TAAGTGAAAATGCCAGAAACTTACTCCCAAAGTGATGGGGAGACATCCAA
GTACAAACAACCAGGCAGATTTAATTTAAGACCAGGAAGGAAAGCTGGAG
GCAGAGAAAAGGGTCAGAAAAAAATGGGCAAAGAAAATCAGCAATGTGGA
TGGAAAAACAAAAACAAAAAAGAACCAACCAACCAATCATCCAACCAACC
AACCAACCAACCAACCAACCAGCCAAATGTCTTACTGGAAAAACACAAAA
TCAGCATGGCCACAAACTCTCTTTATTGCCNAAGCCANCCCAACTTAGAA
GCCCTGGGGTACAAGAAGGAAATGAGATTAAAAAAAGAAATCATAAAAAT
TTTATTCAATGAAATTACACCATAAAATTTTCCAAACCTAGATAAATAGA
TAAAAGACATCAGAGACATTTAGATTCCCAAACAGACATAGCCAGAGAAG
AATTTCACCGTGACATATTGATATAGTGAATGATCCATCAGACATGCCCA
CAGGACACACATGTGAACAAAAAGGGATGGCCTTTGCTTTCACTCTTTTT
ACAACCAAGAGGAAACAATAGGAAAGTATCAGAGAGTAATTAGAAGGGAT
AAAAAGTTAGACCCTGCACACGGTCTTTTTAAAGAAACAGACCAACATGA
GCAGCAGAGAGAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_e21.b1 MSMg01no237_e21.b1 CHROMAT_FILE:
MSMg01no237_e21.b1 PHD_FILE: MSMg01no237_e21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:06 2005
         (364 letters)



>mm_chr3_31854856_31855619
          Length = 764

 Score =  640 bits (331), Expect = 0.0
 Identities = 355/363 (97%)
 Strand = Plus / Plus

                                                                       
Query: 2   tgcctactagatgtactattgctaacacatgattgaataattttctctatagttaagtgc 61
           |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 202 tgcctactagatgtactattgctaacacacaattgaataattttctctatagttaagtgc 261

                                                                       
Query: 62  atagtatatcatccttcctatgtttgcagtaaaatatgccaatctcttctcctatgattt 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 atagtatatcatccttcctatgtttgcagtaaaatatgccaatctcttctcctatgattt 321

                                                                       
Query: 122 gttgacaaactttgaatgattctcctatatctttttcagtaacacatatttctatgtctt 181
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 322 gttgacaaactttgaatgattctcctatatctttttcagtaacacatatttctatgcctt 381

                                                                       
Query: 182 aaattctacttcaccttgtttttattttgggtcctttgggagaaggcagtctttattttc 241
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aaattctacttcaccttggttttattttgggtcctttgggagaaggcagtctttattttc 441

                                                                       
Query: 242 tccacacatatatctaacaatgctcccttcttctttggctgatccgaaatgtcgtatcag 301
           |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 442 tccaaacatatatctaacaatgctcccttcgtctttggctgatccgaaatgtcgtatcag 501

                                                                       
Query: 302 ttgtgcaagagagcagtgtagtaaaggacattatcccatcccacgcaacagggtagcata 361
           ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 502 ttgtgcaagagagcagtgtagtaaaggacattatcccatcccatgcagcagggtagcata 561

              
Query: 362 gca 364
           |||
Sbjct: 562 gca 564


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 764
Length adjustment: 9
Effective length of query: 355
Effective length of database: 755
Effective search space:   268025
Effective search space used:   268025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no237_e21.g1 MSMg01no237_e21.g1 CHROMAT_FILE:
MSMg01no237_e21.g1 PHD_FILE: MSMg01no237_e21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:06 2005
         (311 letters)



>mm_chr3_32015323_32016033
          Length = 711

 Score =  594 bits (307), Expect = e-174
 Identities = 310/311 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taaaaattttattcaatgaaattacaccataaaattttccaaacctagataaatagataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 taaaaattttattcaatgaaattacaccataaaattttccaaacctagataaatagataa 452

                                                                       
Query: 61  aagacatcagagacatttagattcccaaacagacatagccagagaagaatttcaccgtga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 aagacatcagagacatttagattcccaaacagacatagccagagaagaatttcaccgtga 392

                                                                       
Query: 121 catattgatatagtgaatgatccatcagacatgcccacaggacacacatgtgaacaaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 catattgatatagtgaatgatccatcagacatgcccacaggacacacatgtgaacaaaaa 332

                                                                       
Query: 181 gggatggcctttgctttcactctttttacaaccaagaggaaacaataggaaagtatcaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 gggatggcctttgctttcactctttttacaaccaagaggaaacaataggaaagtatcaga 272

                                                                       
Query: 241 gagtaattagaagggataaaaagttagaccctgcacacggtctttttaaagaaacagacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 271 gagtaattagaagggataaaaagttagaccctgcacacggtctttttaaagaaacagaca 212

                      
Query: 301 aacatgagcag 311
           |||||||||||
Sbjct: 211 aacatgagcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)