BAC Information

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BAC

Clone NameMSMg01-237I17
Chromosome3 (Build37)
Map Location 23,484,631 - 23,485,006
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040378, LOC623751, LOC100039548
Downstream geneEG635702, EG665189
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237I17.T7 (MSMg01no237_i17.b1)MSMg01-237I17.TJ (MSMg01no237_i17.g1)
ACCAG402463AG402464
length760762
length of high quality
(start - end)		707 (46 - 752)682 (77 - 758)
definitionCHROMAT_FILE: MSMg01no237_i17.b1 PHD_FILE: MSMg01no237_i17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:24 2005CHROMAT_FILE: MSMg01no237_i17.g1 PHD_FILE: MSMg01no237_i17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:24 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTACAATTATACGAGGAGCTATTGGCACATGACGGATATGGGGGAA
GAGAGAATTCTTTTTCTTCTTGCATATGATCCCTGAGATGTTACTCATTT
ACATTTTCCCACACCCATGTAAACTAAGTGGATTAAGTAGATTTAATTAA
AAAATGTGTGATAATTGGGAAGGAAGAGTAAGGTTAAATGGGAGAGAAAT
GGGAGAGAAGAGAAATGGCATGGATCAAAATGCATTGTATGCATGTGTGA
AATTCTCAATTAAAAAAGATAAATAAGAAAAACATAAAGTTATGTTAAGA
ATTTGGTTTAATGCTTGCATTATGTGTTCCCAAATTGCACAAGAATCCTG
TATGTGAGATGCTGAGGGTCCCTGCTCCCAGCTGGTTCTAATTGATAAAG
TTGTCTTGGCCAATATCTGGGCAGAGAGACAGAGGCAGGAATTTTGGATT
CCTAAGAAAGGGGAACAAGAAAGAAGCAGAATTGCCATAACAGGAAGGAA
TAAGAAGCAGGTTTGAGACCTGCAGAAGACAAAGTAACCATTATGTAAGA
GCCAGGGAAGAACAACTTCAGCCCCCTTGCCTGCCCCTGCCTCCTACCCC
ATTGGTTCTAGGGTAGCAAAGATGGAATAGGAATTTAAATAGTAATAATT
AATGAGTATTGGAGCAGAGGCTTTAGCAACTTGGAAGTTTGGAGTGACCA
AGCCATGGTG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAGTACCGTAATTTTCTAAATCT
ATTTGTAATGAGATGTTTTTTGGGGGGTAAGATAGTCATAATACAGAAAA
TGACTACTTAGAAAGTAAAAGCCACATTTCAATGATTTCAAAGCATCAAA
ATGAAGCAAAATTCTCTAAATATAATAATTTTAAGGATTATGTATCATTA
GTATAATCTTTTTATGCATCAATAAAATTCATTAAAATCTTAATGCTAAA
AAGGAGGAAAATTATATTCTTCCAATAATGATTATGTTAATTCCAGCAAC
CCACAACTTGGTAATTTCTTTCTACTGAATCCTGTTAAAAATGCAGATAT
CTATGCAGTGCTAACTTATGTGTACCTAAACATGTTCTCTTATGAAACTT
AGAGTAGTCTTAATTCCTTTTCAATGAACAAAACTCAGATTTTTTTTTGG
TTGTTGTTAGTTGATGATATAAATCAGGGAACATATTAGGATTGCAGTGT
GTGTCAGGGTGATAATGTTAAACCACAAGTGTGTCGGAGGAGGGGTTAGC
ATTGGTATTAGTAGCTTCATCCATATCTAGTAAACAGAATCTCAGAAGAA
GAATGAAATAATTTGCTAAATAAAGGATGATTCTGTTCTTTGAAAGATGT
TTTTTCTTTTTTCTTCACCTATGAAATAAAGGCTAGAGGAAATGTTTTCT
CTGAGAGTTTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_i17.g1 MSMg01no237_i17.g1 CHROMAT_FILE:
MSMg01no237_i17.g1 PHD_FILE: MSMg01no237_i17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:24 2005
         (682 letters)



>mm_chr3_23484121_23485206
          Length = 1086

 Score =  592 bits (306), Expect = e-173
 Identities = 358/376 (95%), Gaps = 4/376 (1%)
 Strand = Plus / Plus

                                                                       
Query: 311 aaaaatgcagatatctatgcagtgctaacttatgtgtacctaaacatgttctcttatgaa 370
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 aaaaatacagatatctatgcagtgctaacttatgtgtacctaaacatgttctcttatgaa 570

                                                                       
Query: 371 acttagagtagtcttaattccttttcaatgaacaaaactcaga--tttttttttggttgt 428
           |||||||||||||||||||||||||||| ||||||||||| ||  |||||||||||||||
Sbjct: 571 acttagagtagtcttaattccttttcaaggaacaaaactcggacttttttttttggttgt 630

                                                                       
Query: 429 tgtta-gttgatgatataaatcagggaacatattaggattgcagtgtgtgtcagggtgat 487
           |||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 631 tgttattttgatgatataaatcagggaacttattaggattgcagtgtgtgtcagggtgat 690

                                                                       
Query: 488 aatgttaaaccacaagtgtgtcggaggaggggttagcattggtattagtagcttcatcca 547
           ||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||
Sbjct: 691 aatgttaaaccacaagtgtgttggaggaggagttaccattggtattagtagcttcatcca 750

                                                                       
Query: 548 tatctagtaaacagaatctcagaagaagaatgaaataatttgctaaataaaggatgattc 607
           ||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 751 tatctagtaaacaaaatctcagaagcagactgaaataatttgctaaataaaggatgattc 810

                                                                       
Query: 608 tgttctttgaaagatgtttttt-cttttttcttcacctatgaaataaaggctagaggaaa 666
           |||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||| 
Sbjct: 811 tgttctttgaaagatgtttttttcttttttgttcacctatgaaataaaggctaaaggaag 870

                           
Query: 667 tgttttctctgagagt 682
           ||||||||||||||||
Sbjct: 871 tgttttctctgagagt 886


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1086
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1076
Effective search space:   723072
Effective search space used:   723072
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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