Query= MSMg01no237_k07.b1 MSMg01no237_k07.b1 CHROMAT_FILE:
MSMg01no237_k07.b1 PHD_FILE: MSMg01no237_k07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:31 2005
(618 letters)
>mm_chr3_21943767_21944784
Length = 1018
Score = 824 bits (426), Expect = 0.0
Identities = 452/464 (97%), Gaps = 6/464 (1%)
Strand = Plus / Minus
Query: 154 aaaagagtccactgaaaaagtatactgagaacatgactgacaattttctatctttatttt 213
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1018 aaaagagtccactgaaaaagtatactgagaacatgcctgacaattttctatctttatttt 959
Query: 214 tgtttaggcttaagattgggtcaactgagctgggcttggtggcacacgcctttaatccca 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 958 tgtttaggcttaagattgggtcaactgagctgggcttggtggcacacgcctttaatccca 899
Query: 274 gcacttgggaagaagaggtaggcagatttctgagtttgaggccagcctggtctacagagt 333
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 898 gcacttgggaagaagaggcaggcagatttctgagttcgaggccagcctggtctacagagt 839
Query: 334 gagttccaggacagccagggctacacagagaaaccctgtctcgaaaaacctaaaaaaaaa 393
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 838 gagttccaggacagccagggctacacagagaaaccctgtctcgaaaaacc------aaaa 785
Query: 394 aaaaaaaaaaaaaagattgtgtcagctggaaaagattgaccccagagtcatggacatctg 453
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 aaaaaaaaaaaaaagattgggtcagctggaaaagattgaccccagagtcatggacatctg 725
Query: 454 gatctgtgaatgggtcgtagttctctgttagttataatcaaagtgaatgtccaactttgg 513
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 724 gatctgtgaatgggtcgtagttctctgttagttataatcaaagtgaatgtccaagtttgg 665
Query: 514 aaatcatgatacaaacttgaacattcctataatctcatcaagagaaacaaactatcatct 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 aaatcatgatacaaacttgaacattcctataatctcatcaagagaaacaaactatcatct 605
Query: 574 ctgtctctgtctctgtctctgtctctgtctctgtctctgtctct 617
|||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 604 ctgtctctgtctctgtctctgtctctgtctctgtctctctctct 561
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space: 612864
Effective search space used: 612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no237_k07.g1 MSMg01no237_k07.g1 CHROMAT_FILE:
MSMg01no237_k07.g1 PHD_FILE: MSMg01no237_k07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:31 2005
(333 letters)
>mm_chr3_21819856_21820588
Length = 733
Score = 617 bits (319), Expect = 0.0
Identities = 332/341 (97%), Gaps = 8/341 (2%)
Strand = Plus / Plus
Query: 1 taggcaagtgtggaacagagctggagaaaacgaagccctgagtcttgtatatgccaggaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 taggcaagtgtggaacagagctggagaaaacgaagccctgagtcttgtatatgccaggaa 252
Query: 61 atgacaaagccagcccactagagatgttcttcattgaggaagtgagggcaggattccctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 atgacaaagccagcccactagagatgttcttcattgaggaagtgagggcaggattccctt 312
Query: 121 aaagcggggtttccaaagtatacagacagagagaaggttgact--------gttattcct 172
||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 313 aaagcggggtttccaaagtatacagacagagagaaggttgactactggtctgttattcct 372
Query: 173 cactagaactaaaaacaacaggcatcaccacccaaccttgagaggaaacagcagaaaata 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 cactagaactaaaaacaacaggcatcaccacccaaccttgagaggaaacagcagaaaata 432
Query: 233 atagactcttctgcagtaggaaagtgctaaaaggttctactttggtttgattaatcattg 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 atagactcttctgcagtaggaaagtgctaaaaggttctactttggtttgattaatcattg 492
Query: 293 gtttgggttggttaatttgtttgtttgtttttgtttttcaa 333
|||||||||||||||||||||||||||||||| ||||||||
Sbjct: 493 gtttgggttggttaatttgtttgtttgtttttatttttcaa 533
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 733
Length adjustment: 9
Effective length of query: 324
Effective length of database: 724
Effective search space: 234576
Effective search space used: 234576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
