BAC Information

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BAC

Clone NameMSMg01-260E17
Chromosome3 (Build37)
Map Location 124,872,348 - 124,872,715
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043333, EG668809, Tram1l1, LOC100043740, 1700006A11Rik, 1700003H04Rik, LOC668817, LOC668820
Downstream geneNdst4, Ugt8a
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-260E17.T7 (MSMg01no260_e17.b1)MSMg01-260E17.TJ (MSMg01no260_e17.g1)
ACCAG402998AG402999
length7531,043
length of high quality
(start - end)
375 (46 - 420)---
definitionCHROMAT_FILE: MSMg01no260_e17.b1 PHD_FILE: MSMg01no260_e17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:21 2005CHROMAT_FILE: MSMg01no260_e17.g1 PHD_FILE: MSMg01no260_e17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCG
GAATTCATACCATCTTCCTGGACTACTGTGTTTTATATTTAATTTGGGGG
ACTGAGTATAAGCCTAAGGACCTCACTATTCATGAATCCCAGTTAACCAT
TTACAATACAAAACATGATTACGTACTTGTAATCCAGTATGCAGGACAGA
GTCCAGAAGATCCCAGGAACTAAGATGCCAGCAACCCTAGCAATAATGGT
GACTACTCAGATCAGTGGGAGACTTAATGCCTATGCAAAATTGATGAAAG
CAAGAGTTAAACAATTGGAGTCATTCTCTAGTCTCTGTATGCAATTGACA
AAGAATCTAAAACCATCCAGTAGAAAAGAGACAGCATTTTCAACAAATGA
TGCTGGCTCAACTGGAGGCCAGCATGTAGAAGCAATCCATCCATTCTTTT
TTTTTTTTTCAGTTTTTTTTAAATTATTTTTTATTTTTTTTATTTTTTTT
ATTACATATTTTCTTCAATTACATTTCCAATGCTATCCCAAAAGTCCCCC
ATATCCTCCCCCCCCCACTTTATCTCCTTGTACAAAGCTCTGATTCATGT
GGATCAAAGACCACCACATAAAACCAGATTACAGTGAACCTAATCAAAAA
GGAAGTGTTGAAAAAATGTGGTACATTTACTCTGTGGAGCACTTCTCACC
TATTAAAACCAATGATTTCTTGTAATTCTAAAACCAATGAATGGAGCTAA
AAN
TACAGATATTTAATAAGGGATTTGTGGCGTTAGGGGTATAATTCTTTTTA
AAAAGAATGTGGTTTAGGACTTGTTTCCTTTAACCAAAAAAATAAAGTTG
AGGATATATTGAAATTTATGTGTAATATTAAAAGAGGACATACTTATTTA
TTAAATATAATTTTATAGAATTGCAAAAGGGTGGTGGTATAGATTTAAGT
GAGGGTTATATGGGTGATATTACTGATATTATGTGGTATAGGATATTATT
ACATCATTCGCCATTTGATAGCGGTGGAAAATTACATATAATTTTAACGG
ATTATGGGGGTGTCGTACTATTATTATCCATTTCACGCCCCACGGGAACG
ATAATAAATTTGGATCCAAAAGGAGGTTAGTGGACAGATTAGCCGTTTAT
ACAGGACGTAATCGCGATGATATAGGCGTGAGTGTTATCACGTTAAAGAA
AACACCGCGGCACATTTAGGGCATTTATTTTACCGGCGCGTCGTAGTTTT
AAATCTTTATATGATTTTTCGAGTTAGATAGTATATGTGTTGGGGTGGCT
TGTGGACACCCCCCCGCCGTGTGTTTTTTTTCAAGATAAGTATGAAATGA
TGTAGTTTTGATTTCGGACGTTTAAGTTTTTTTTGTTTGTGGCGTTATGA
TTGTTATCGCAAGTATTCGATTAGTAATATAATTAGCATCGGATCCGGTA
TTTTTGTTTAGCGTCATATTGTCGGGTGCACGTAGGTATTGATTGGCAGG
TAATTTAACGAGGTAATTGGTAAAAACATTGATATAATATGTGTAACAAG
TGTATATTAGAGAGAGTTCTTATTGGTTTTGTTTCACGTTGACAGTAGAT
CAGTAGCAGCGTTTTTATAATTGTAGATTTTTTAGCCGTAGATATTGTCC
CCTCGATTGGGTACGGTACGTAGAGTATTTAAGTTATAGCCGAGTATAAA
TTATCACCATATGTGAGATAATACAGCCGCGCATTATTTTAGAGTAGGAA
AACTATTACGTACTGATATTTATGACGAGATAAGGATATTAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no260_e17.b1 MSMg01no260_e17.b1 CHROMAT_FILE:
MSMg01no260_e17.b1 PHD_FILE: MSMg01no260_e17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:21 2005
         (375 letters)



>mm_chr3_124872217_124872991
          Length = 775

 Score =  642 bits (332), Expect = 0.0
 Identities = 359/372 (96%), Gaps = 8/372 (2%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcataccatcttcc----tggactactgtgttttatatttaatttgggggactgag 61
           |||||||||||||    |    ||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gaattcataccat----caaagtggactactgtgttttatatttaatttgggggactgag 444

                                                                       
Query: 62  tataagcctaaggacctcactattcatgaatcccagttaaccatttacaatacaaaacat 121
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tataagcctaaggacctcaatattcatgaatcccagttaaccatttacaatacaaaacat 384

                                                                       
Query: 122 gattacgtacttgtaatccagtatgcaggacagagtccagaagatcccaggaactaagat 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gattacgtacttgtaatccagtatgcaggacagagtccagaagatcccaggaactaagat 324

                                                                       
Query: 182 gccagcaaccctagcaataatggtgactactcagatcagtgggagacttaatgcctatgc 241
           |||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||
Sbjct: 323 gccagcaaccctagcaataatggtgagtactcagatcagtgggagactcaatgccaatgc 264

                                                                       
Query: 242 aaaattgatgaaagcaagagttaaacaattggagtcattctctagtctctgtatgcaatt 301
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aaaagtgatgaaagcaagagttaaacaattggagtcattctctagtctctgtatgcaatt 204

                                                                       
Query: 302 gacaaagaatctaaaaccatccagtagaaaagagacagcattttcaacaaatgatgctgg 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gacaaagaatctaaaaccatccagtagaaaagagacagcattttcaacaaatgatgctgg 144

                       
Query: 362 ctcaactggagg 373
           ||||||||||||
Sbjct: 143 ctcaactggagg 132


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 775
Length adjustment: 9
Effective length of query: 366
Effective length of database: 766
Effective search space:   280356
Effective search space used:   280356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)