Query= MSMg01no260_h12.b1 MSMg01no260_h12.b1 CHROMAT_FILE:
MSMg01no260_h12.b1 PHD_FILE: MSMg01no260_h12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:34 2005
(682 letters)
>mm_chr3_73441858_73442940
Length = 1083
Score = 1243 bits (643), Expect = 0.0
Identities = 671/681 (98%), Gaps = 3/681 (0%)
Strand = Plus / Plus
Query: 4 ggaattctctgggcttcaccgcactttattgtgactactgacacattcaaacatgtgtgt 63
|||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctctgggctt-atagcactttattgtgactactgacacattcaaacatgtgtgt 262
Query: 64 ttaacagcttctatactctaggcctctccagggtgaggcagac--tgttataatactagg 121
|||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 263 ttaacaacttctatactctaggcctctccagggtgaggcagacattgttataatactagg 322
Query: 122 ctatattccataaggcactcaaataaactcctttttaatatatgtattcattttgtctgc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ctatattccataaggcactcaaataaactcctttttaatatatgtattcattttgtctgc 382
Query: 182 agtgttccttgagataatcctaataccaatttgtatgcatcttagatcaggtagtcaact 241
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 agtgttccttgagataaccctaataccaatttgtatgcatcttagatcaggtagtcaact 442
Query: 242 gttcttttcttttttccttagtgtaacaaagctggatttaagttacttgtagattaagaa 301
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 443 gttcttttcttttttccttagtgtaacaaagttggatttaagttacttgtagattaagga 502
Query: 302 aaattactcatggattacagttcagtgtaaaggaatggcaaataacactatatttaggca 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aaattactcatggattacagttcagtgtaaaggaatggcaaataacactatatttaggca 562
Query: 362 aagcccctctcaccctacatactgcctttgcaaacaagtttgtgatgagaacaggtactg 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aagcccctctcaccctacatactgcctttgcaaacaagtttgtgatgagaacaggtactg 622
Query: 422 ttgagtacagtacatacaagcatgatatagaatttcgctagcttgattttcttgtccttc 481
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ttgagtacagtacatacaagcgtgatatagaatttcgctagcttgattttcttgtccttc 682
Query: 482 ttcatcaatgtgcagattgtcctatttattagtcattgagctaagtgtgtcactgctaaa 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ttcatcaatgtgcagattgtcctatttattagtcattgagctaagtgtgtcactgctaaa 742
Query: 542 attatactaataaccatcaaagaaattatgattgacatgaatttaattacataacttttg 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 attatactaataaccatcaaagaaattatgattgacatgaatttaattacataacttttg 802
Query: 602 aaattatcctcatcattataaacttcatcatactatttttgaaaatgaaaattcaatata 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 aaattatcctcatcattataaacttcatcatactatttttgaaaatgaaaattcaatata 862
Query: 662 ataagattcttttttggaaga 682
|||||||||||||||||||||
Sbjct: 863 ataagattcttttttggaaga 883
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1083
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1073
Effective search space: 721056
Effective search space used: 721056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no260_h12.g1 MSMg01no260_h12.g1 CHROMAT_FILE:
MSMg01no260_h12.g1 PHD_FILE: MSMg01no260_h12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:34 2005
(600 letters)
>mm_chr3_73615109_73616103
Length = 995
Score = 1065 bits (551), Expect = 0.0
Identities = 587/601 (97%), Gaps = 7/601 (1%)
Strand = Plus / Minus
Query: 1 tgtctaaaacatcatcttgtaagatcttatatttttcatgtaatattctgaatagctgtt 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 tgtctaaaacaccatcttgtaagatcttatatttttcatgtaatattctgaatagctgtt 736
Query: 61 ctatcaatttatttttcaatattgaaatatcgatattgaatttagttttaatgattttct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 ctatcaatttatttttcaatattgaaatatcgatattgaatttagttttaatgattttct 676
Query: 121 attctgtcagtatttatttatgtgttaatttattttctctttctgttttcaactttaata 180
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 attctgtcag----tatttatgtgttaatttattttctctttctgttttcaactttaata 620
Query: 181 tgttctttctgggtatgaacattctgtagcttgttctttctatgtctcttaagggaccaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tgttctttctgggtatgaacattctgtagcttgttctttctatgtctcttaagggaccaa 560
Query: 241 caaaagtattactgcttttcatcagatttgagaatttgtctcccatacatgtttttaatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 caaaagtattactgcttttcatcagatttgagaatttgtctcccatacatgtttttaatt 500
Query: 301 gcctttcgcgtctcctaatatttcattgtgtttatttagtattgcttttcttttacattc 360
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gcctttcgcgtcttctaatatttcattgtgtttatttagtattgcttttcttttacattc 440
Query: 361 gtggtcttttaatt-tttctatagatcataattttagtatagtattttttataatatgct 419
||||||||||||| ||| |||||||||||||||||||| ||||||||| ||||||||||
Sbjct: 439 ttggtcttttaattattt-tatagatcataattttagtagagtattttt-ataatatgct 382
Query: 420 taaagttttgcagaattgtagttttcttttcttccttgctttttaaaaatagaacctcca 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaagttttgcagaattgtagttttcttttcttccttgctttttaaaaatagaacctcca 322
Query: 480 tgccggactcaattgttctgcatttgtcagtatgtcgtgcagtttgcaacagtctttctt 539
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgctgaactcaattgttctgcatttgtcagtatgtcgtgcagtttgcaacagtctttctt 262
Query: 540 cctaaacttcagtttgggtttacatgcataaattacaatgtctgatttcaaagttcttga 599
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctaaacttcagtttggatttacatgcataaattacaatgtctgatttcaaagttcttga 202
Query: 600 g 600
|
Sbjct: 201 g 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 995
Length adjustment: 10
Effective length of query: 590
Effective length of database: 985
Effective search space: 581150
Effective search space used: 581150
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
