Query= MSMg01no260_k19.b1 MSMg01no260_k19.b1 CHROMAT_FILE:
MSMg01no260_k19.b1 PHD_FILE: MSMg01no260_k19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:50 2005
(523 letters)
>mm_chr3_20163659_20164581
Length = 923
Score = 967 bits (500), Expect = 0.0
Identities = 506/508 (99%)
Strand = Plus / Plus
Query: 16 ggaattcaatgggcagtccccgatttatccatactgatcaatttttaagggatgaatcac 75
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 ggaattcaatgggcagttgccgatttatccatactgatcaatttttaagggatgaatcac 275
Query: 76 tattttagctgtcagctagtccacctaaggcaggtgagaaagtgtaacttagtgaaattt 135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tattttagctgtcagctagtccacctaaggcaggtgagaaagtgtaacttagtgaaattt 335
Query: 136 aaataaacccaattttctaacttaaaaaatgcatgtcatacaaaggtctgttgacaagta 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 aaataaacccaattttctaacttaaaaaatgcatgtcatacaaaggtctgttgacaagta 395
Query: 196 ttaaaactaatttatccccataggaacttggaattgtcaattgtgtgtatctatgtgtat 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ttaaaactaatttatccccataggaacttggaattgtcaattgtgtgtatctatgtgtat 455
Query: 256 atgtctgtatatttgtgttcttttgtgtatgcatgtgtgtgtatatatatatgtatgcat 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 atgtctgtatatttgtgttcttttgtgtatgcatgtgtgtgtatatatatatgtatgcat 515
Query: 316 gtgtgaacatgtcatttttcatatactaggttataaaggaatgaatcgaaattaatactt 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gtgtgaacatgtcatttttcatatactaggttataaaggaatgaatcgaaattaatactt 575
Query: 376 tctatttcttccatcaaaaattattctgtccacccacctctctcacaaaccactgacaga 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 tctatttcttccatcaaaaattattctgtccacccacctctctcacaaaccactgacaga 635
Query: 436 atgcaggagaaatccactctcttgcgtggaaaccacagtcgatgaagaaggcaggcttat 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 atgcaggagaaatccactctcttgcgtggaaaccacagtcgatgaagaaggcaggcttat 695
Query: 496 ttggtctatctttgccaatctattgtga 523
||||||||||||||||||||||||||||
Sbjct: 696 ttggtctatctttgccaatctattgtga 723
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space: 468369
Effective search space used: 468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no260_k19.g1 MSMg01no260_k19.g1 CHROMAT_FILE:
MSMg01no260_k19.g1 PHD_FILE: MSMg01no260_k19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:50 2005
(683 letters)
>mm_chr3_20265895_20266977
Length = 1083
Score = 758 bits (392), Expect = 0.0
Identities = 413/421 (98%), Gaps = 2/421 (0%)
Strand = Plus / Minus
Query: 263 ttcaagagtatttcacaccaggcagtgatggcacattcctttaatcccagcatttgcaag 322
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 1083 ttcaagagtatttcacaccaggcagtgatggcacatgcctttaatcccagcatttacaag 1024
Query: 323 gcagaagcaggcagatttctgagttcaaggcctgcctgctatagagtgagttccaggaca 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1023 gcagaagcaggcagatttctgagttcaaggcctgcctgctatagagtgagttccaggaca 964
Query: 383 tccagggctatacagagaaaccctgtctcgggaaacaaaacaaaacaaaaaacaaaaaga 442
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 963 tccagggctatacagagaaactctgtctcgggaaacaaaacaaaacaaaaaacaaaaaga 904
Query: 443 aaaataaaaaaataaataaaaacctacaaatacaaaaggcttgagttcctattttgtctg 502
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 903 aaaataaaaaaataa--aaaaacctacaaatacaaaaggcttgagttcctattttgtctg 846
Query: 503 tagacttttaaattttcctttttgtttttctaactacaaagttggatacaagtcaagaga 562
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 tagacttttaaaatttcctttttgtttttctaactacaaagttggatacaagtcaagaga 786
Query: 563 ccgaaggtacttatatgacattactgactttctaatacgttaacaagaatagttgtaatg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 ccgaaggtacttatatgacattactgactttctaatacgttaacaagaatagttgtaatg 726
Query: 623 aatgatattcaagaagcattttanaaaatagatgaaaatctaacctttcattctatgcaa 682
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 725 aatgatattcaagaagcattttaaaaaatagatgaaaatctaccctttcattctatgcaa 666
Query: 683 c 683
|
Sbjct: 665 c 665
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1083
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1073
Effective search space: 722129
Effective search space used: 722129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
