Query= MSMg01no260_o16.b1 MSMg01no260_o16.b1 CHROMAT_FILE:
MSMg01no260_o16.b1 PHD_FILE: MSMg01no260_o16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:10 2005
(625 letters)
>mm_chr3_146361198_146362221
Length = 1024
Score = 978 bits (506), Expect = 0.0
Identities = 577/616 (93%), Gaps = 28/616 (4%)
Strand = Plus / Minus
Query: 1 accacttaaactaagatttcttttagcccaggttatccattcatccacattcagccagcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 accacttaaactaagatttcttttagcccaggttatccattcatccacattcagccagcc 535
Query: 61 aggtgaatgacaggcaggtcccgtgcaaatggagccatgagatattacagatctgcctgt 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 aggtgaatgacaggcagggcccgtgcaaatggagccatgagatattacagatctgcctgt 475
Query: 121 agctctccaagcctcaagttgtactgggaattagaagtaatgtgtataattgcccacaat 180
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 agctctccaggcctcaagttgtactgggaattagaagtaatgtgtataattgcccacaat 415
Query: 181 tgctcaacgcataacatttattgctttaattaatgactagaggggaagatgagccagaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 414 tgctcaacgcataacatttattgctttaattaatgactagaggggaagatgagccag-ac 356
Query: 241 actgaaggtttttgagctctgtggcaatgctgtggtgtaagaaggttcaggagttacagg 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 actgaaggttacagagctctgtggcaatgctgtggtgtaagaaggttcaggagttacagg 296
Query: 301 a-----ccccccttttcctgctcagtgttgagggtggagtaaattaaagctcctgcttat 355
| |||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct: 295 aggggg-----cttttcctgctcagtgttgagggtggagtaaattaaagttcctgcatat 241
Query: 356 tgaaggtgggtcccagcaacgaaggtataagggttgcacaaaccaaccaaccaaccaacc 415
|||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 240 tgaaggtgggtcccagcaacgaaggtatgagggttgcaca----------------aacc 197
Query: 416 aaccaaccaaccaaccaaccaaccaaaacaaacaaacac-aaaaaaattgcaagaataaa 474
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 196 aaccaaccaaccaaccaaccaaccaaaacaaacaaacacaaaaaaaattgcaagaataaa 137
Query: 475 aggtttctgagtgcatagtgatcaatcattaattcaaaagaaaatttggaatgaaatgaa 534
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 136 aggtttctgagtgcatagtgatcaatcattaattcagaagaaaatttggaatgaaatgaa 77
Query: 535 gtgatgctggcagagcttgcccatgtcccattgcacggcttcacagcagctctgggtcta 594
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 76 gcgatgctggcagagcttgcccatgtcccattgcacggcttcacagcagccctgggtcta 17
Query: 595 agcacagcgtataaca 610
||||||||||||||||
Sbjct: 16 agcacagcgtataaca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1024
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1014
Effective search space: 623610
Effective search space used: 623610
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no260_o16.g1 MSMg01no260_o16.g1 CHROMAT_FILE:
MSMg01no260_o16.g1 PHD_FILE: MSMg01no260_o16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:10 2005
(247 letters)
>mm_chr3_146226781_146227427
Length = 647
Score = 464 bits (240), Expect = e-135
Identities = 243/244 (99%)
Strand = Plus / Plus
Query: 1 tctctcttttattatgagtattaagtgatcatcaaaagttacctgttagcaatacaagta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctctcttttattatgagtattaagtgatcatcaaaagttacctgttagcaatacaagta 260
Query: 61 ctttcttgtcttgggttttcccacaagttctgatggccaaataactaaaatcagtaggtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctttcttgtcttgggttttcccacaagttctgatggccaaataactaaaatcagtaggtc 320
Query: 121 agagccaccgtaagtgccaggctcaacacaagttaaaaaattagagatgaagagtcacag 180
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 agagccaccgtaagtgccaggctcaacacaagttaaaaaactagagatgaagagtcacag 380
Query: 181 gcagcagaagacctgggccttgacagatttccttcatgtctatggaatgggggagggggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcagcagaagacctgggccttgacagatttccttcatgtctatggaatgggggagggggg 440
Query: 241 ctgg 244
||||
Sbjct: 441 ctgg 444
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space: 151844
Effective search space used: 151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
