BAC Information

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BAC

Clone NameMSMg01-261L02
Chromosome3 (Build37)
Map Location 89,296,913 - 89,456,592
singlet/doubletdoublet
Overlap geneKcnn3
Upstream geneLmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2, Rxfp4, 2810403A07Rik, Rit1, Syt11, 5830417I10Rik, Msto1, Dap3, Ash1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk
Downstream geneLOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra, Atp8b2, LOC668102, Hax1, Ubap2l, 4933434E20Rik, 1700094D03Rik, Tpm3, Nup210l, Rps27, Rab13, Jtb, Creb3l4, LOC100042397, Slc39a1, Crtc2, Dennd4b, Gatad2b, Slc27a3, Ints3, Npr1, LOC668141, Ilf2, Snapap, 2500003M10Rik, S100a1, S100a13, S100a14, S100a16, EG628324, S100a3, S100a4, S100a5, S100a6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-261L02.T7 (MSMg01no261_l02.b1)MSMg01-261L02.TJ (MSMg01no261_l02.g1)
ACCAG404005AG404006
length764725
length of high quality
(start - end)		237 (131 - 367)432 (76 - 507)
definitionCHROMAT_FILE: MSMg01no261_l02.b1 PHD_FILE: MSMg01no261_l02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:08 2005CHROMAT_FILE: MSMg01no261_l02.g1 PHD_FILE: MSMg01no261_l02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,296,913 - 89,297,149)(89,456,161 - 89,456,592)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCCACATTCCTCACGGGTCTTTCCAGTTCCTGGGCAGAACAAGTTG
TTCTTAATATCTCCCCAAACACCACCCCAAAGGAGATGCGGAAGGGCAGA
TGTGTGGGGGAAGGGAGGGCCCCAGAGAAGGGGGTAACACAGCCAGCCTA
GGAGTCCTGCTGCCTTAAGGTCACCTCAGGGTTATGGAAGGCCTGTCCAG
CTGCCGGAGCGATCAATCAGAGCTCCAGTGGGCTCCCTGCTGACCACCCT
TACAAGATTAATATTAAGCAGCTCTCCTTTGAGCTTCTGCATTTAGATCA
GCTTTCATTATTTATTTATTGGGTGTGCCTCCCCCCCACGTTCGCTTGCC
AGATCCACATAGATCCTTGAGACTTGAACTCAGGGTGACTGTTAGACTTG
GTGGGAAGCTCCTTTACCTACCGAGTCTTCTTGTCTGGTGCACTGTGTTC
CTAGCTTGATAGCTTTATTCTTGGTCTGCTTTGAACATATGCCAATCAAT
TCAGGTGTTTCACACCTTTTGAGAGTAATTTATTCACCCTACCGATTTTT
CGTATGCTTTTTCACTTACCCTTTGTGTTCATGCTTGTTTTTGGCCCAGC
CCCTTTGGCCCGGCTTTTTTTTGGTTCCTTCTCCTGAAGCTTCCCCCGGT
TTTCCACACTTGTTGTTTGACTTTTATTCCTTTGGGCCCGGGTGTTACCT
GCGGCTTGTAAGCC

NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATAAGGATGCAAGTGAGAGCCATTA
TCCAGACAGCCCAAAAGGGGAAAACGGATGGTGGCGTTTTGGTGAGCAAC
AATATTTGGGAATGTGGGCTCTACTGGAATAATCTCTTTAAATGACTTTT
TAAAGGGATTGGATTTAGGTACAACTCCAGTATAATTTTAAGGCTCTCTA
CTGGCCTTAATGAGAATCATGAAAATATTTGAGCATAGTCAAAAATATAG
CATCATCCTGTGTGGTTGATTTGACCCCATCAGGCAGGGAGGCGAGACGG
CTTCTATCACTGTGTGCTATTGATCTAATTATCAGGAAAATTATCTGGTT
GCTGGAAGCATGTGGTGACTCACCTGGTTTGTTGAGATTCGTGCACTCAG
TAGGGGCATTGGGTAGTGCATCAGTAGGGGCTGTGCGCCTGAGCTGCATG
CTCCTAACCTGCACTCAAAGGAGCGTTGCTAAGCCACACCCGGTGTCTGA
TCTCTTTCTGATCAGCTCCCACTTCGGTTGTGGACCTGCATGAAGGCATG
GGTGTGAAGTGCCTTACCCGTTTGGTGAGCTGAGTGTCCATCATGAAATT
GTGCACATGCTTTCTCTGCTTTGGTGAAGTCGAGCTTTTCGGGCACCCCT
GGTTTCCACAATGGGCAGTGCAACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no261_l02.b1 MSMg01no261_l02.b1 CHROMAT_FILE:
MSMg01no261_l02.b1 PHD_FILE: MSMg01no261_l02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:08 2005
         (237 letters)



>mm_chr3_89296713_89297349
          Length = 637

 Score =  427 bits (221), Expect = e-124
 Identities = 233/237 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggagatgcggaagggcagatgtgtgggggaagggagggccccagagaagggggtaacac 60
           |||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 201 aggagatgaggaagggcagatgtgtgggggaagggagggccccagagatgggggcaacac 260

                                                                       
Query: 61  agccagcctaggagtcctgctgccttaaggtcacctcagggttatggaaggcctgtccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agccagcctaggagtcctgctgccttaaggtcacctcagggttatggaaggcctgtccag 320

                                                                       
Query: 121 ctgccggagcgatcaatcagagctccagtgggctccctgctgaccacccttacaagatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgccggagcgatcaatcagagctccagtgggctccctgctgaccacccttacaagatta 380

                                                                    
Query: 181 atattaagcagctctcctttgagcttctgcatttagatcagctttcattatttattt 237
           ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 atattaagcagctctcctttgagcttctgcatttagatcagttttcattatttattt 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no261_l02.g1 MSMg01no261_l02.g1 CHROMAT_FILE:
MSMg01no261_l02.g1 PHD_FILE: MSMg01no261_l02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:08 2005
         (432 letters)



>mm_chr3_89455961_89456792
          Length = 832

 Score =  828 bits (428), Expect = 0.0
 Identities = 431/432 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataaggatgcaagtgagagccattatccagacagcccaaaaggggaaaacggatggtggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 ataaggatgcaagtgagagccattatccagacagcccaaaaggggaaaacggatggtggc 573

                                                                       
Query: 61  gttttggtgagcaacaatatttgggaatgtgggctctactggaataatctctttaaatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 gttttggtgagcaacaatatttgggaatgtgggctctactggaataatctctttaaatga 513

                                                                       
Query: 121 ctttttaaagggattggatttaggtacaactccagtataattttaaggctctctactggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 ctttttaaagggattggatttaggtacaactccagtataattttaaggctctctactggc 453

                                                                       
Query: 181 cttaatgagaatcatgaaaatatttgagcatagtcaaaaatatagcatcatcctgtgtgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cttaatgagaatcatgaaaatatttgagcatagtcaaaaatatagcatcatcctgtgtgg 393

                                                                       
Query: 241 ttgatttgaccccatcaggcagggaggcgagacggcttctatcactgtgtgctattgatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ttgatttgaccccatcaggcagggaggcgagacggcttctatcactgtgtgctattgatc 333

                                                                       
Query: 301 taattatcaggaaaattatctggttgctggaagcatgtggtgactcacctggtttgttga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 taattatcaggaaaattatctggttgctggaagcatgtggtgactcacctggtttgttga 273

                                                                       
Query: 361 gattcgtgcactcagtaggggcattgggtagtgcatcagtaggggctgtgcgcctgagct 420
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 gattcatgcactcagtaggggcattgggtagtgcatcagtaggggctgtgcgcctgagct 213

                       
Query: 421 gcatgctcctaa 432
           ||||||||||||
Sbjct: 212 gcatgctcctaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 832
Length adjustment: 9
Effective length of query: 423
Effective length of database: 823
Effective search space:   348129
Effective search space used:   348129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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