Query= MSMg01no262_a20.b1 MSMg01no262_a20.b1 CHROMAT_FILE:
MSMg01no262_a20.b1 PHD_FILE: MSMg01no262_a20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:35 2005
(299 letters)
>mm_chr3_31828413_31829111
Length = 699
Score = 451 bits (233), Expect = e-131
Identities = 278/293 (94%), Gaps = 4/293 (1%)
Strand = Plus / Plus
Query: 5 gaattcctagagtg-ccatcctgggaaggggctcagta-actcataaagctaagacccaa 62
|||||||||||| | |||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 205 gaattcctagagagagcatcctgggaaggggctcagtaga-tcataaagctaagacccaa 263
Query: 63 cagtggaaagttatgaatggagaaaagatactaagagccctacctaagaaaaaagagctt 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cagtggaaagttatgaatggagaaaagatactaagagccctacctaagaaaaaagagctt 323
Query: 123 gggggatggggttatgttccagtagtcctttcgtttacttctgattctaaactctcagta 182
|||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 324 ggggaat-gggttatgttccagtagtcctttcgtttacttctgattctaaactctccgta 382
Query: 183 aaccatatgatctttatggtgcttgagtgcaagagaacttttattctgaagataactatg 242
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 383 aaccatatgatgtttatggtgcttgagtgcaagaggacttttattctgaagataactatg 442
Query: 243 ataaatctagcctcagagacttctccagaatatgtgtggtaaggagaagggat 295
|||||||||| |||||||||||||| |||| |||||||| ||| |||||||||
Sbjct: 443 ataaatctagtctcagagacttctctagaaaatgtgtggcaagaagaagggat 495
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 699
Length adjustment: 9
Effective length of query: 290
Effective length of database: 690
Effective search space: 200100
Effective search space used: 200100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no262_a20.g1 MSMg01no262_a20.g1 CHROMAT_FILE:
MSMg01no262_a20.g1 PHD_FILE: MSMg01no262_a20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:35 2005
(507 letters)
>mm_chr3_31996114_31997021
Length = 908
Score = 795 bits (411), Expect = 0.0
Identities = 432/439 (98%), Gaps = 1/439 (0%)
Strand = Plus / Minus
Query: 1 ctttagctctgcaatggggaaaagaatctggag-ttttccccagaggaaaattctttgga 59
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 439 ctttagctctgcaatggggaaaagaatctggagtttttccccagaggaaaattctttgga 380
Query: 60 acacttaaacaacacaataaattcttatctctgaggctgtgtgaccatgaagttgcttct 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 acacttaaacaacacaataaattcttatctctgaggctgtgtgaccatgaagttgcttct 320
Query: 120 gcagtgctttttgtttttgccacagagttctttgcttcaatgtgtcacctggggtaagta 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gcagtgctttttgtttttgccacagagttctttgcttcaatgtgtcacctggggtaagta 260
Query: 180 ggtgttataattctagatttaccagtgacagtcccgccgagaggttcagagacagcacct 239
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 259 ggtgttataattctagatttaccagtgacagtcccgccaagaggttcagagacagcacct 200
Query: 240 atgatggttaatcttaattgtcagtttggctggatttaaagtcaccgtcgaaacacattt 299
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 199 atgatggttaatcttaattgttagtttggctggatttaaagtcaccgtcgaaacacattt 140
Query: 300 ccaggcaggtctgtgagggcttacttagattaggttaattgagaaggtaagacccttcct 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 139 ccaggcaggtctgtgagggcttacttagattaggttaattgagaaggtaagacccatcct 80
Query: 360 aaatgtgggtaccgtttcgcagactaggatattggactgaatgaaaaggagatatcgggg 419
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 79 aaatgtgggtaccgttttgcagactaggatattggactgaatgaaaaggagatatcgcgg 20
Query: 420 tgagtataagcatccatct 438
|||||||||||| ||||||
Sbjct: 19 tgagtataagcacccatct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 908
Length adjustment: 10
Effective length of query: 497
Effective length of database: 898
Effective search space: 446306
Effective search space used: 446306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
