TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTTAGGAAGGAAAAGTGCACAGCTAATGACCACATACATAATGTG
TGGCTATGCTGAGTGGAGCCGTGAAGGTTCTGTGTCATCTTCATTTAAGG
ATTAGGAATCAGGGAAGTTTGCTTAAAGTCGGTGAGCAGAGCTAGATTCC
AGCCAGGTTGTGTGGTGCTGTGTAGTCATCACACCACCTCTGTATTCAGC
CGCCTGCTGGAAAAACCACATTTAAAGTGGTAGGAGCAGAAGTTTAGTGG
GATTTAAAGCACAAGCATTTCATGATGGTGCATTGAGTACAGATTTCTTT
TTAACGTTTGGTCAAAATGGTGTCTTCTCTCCTCTATGAAGTACATAAAG
AACAAGTCTGGAAGCCCCGCCACACACACCCCCTCCGCCCCCAAATTGCC
CTAGTAAATCCCGCGGGGTTTGTTTCTTCTGTTTCAGAAAAGAAATTAAA
TATCTCCCTTTGCTCTTACTTTATAATCTAGACACACACACAAACCCCCA
CAAAAATCAAACCCTGTTGCAGATCTGGTTCTGTGTTGACTGACGTGATC
CACCGTTTTTAGAGATAGCACCACATCCTCTGTTTAAGCAAGTATACACT
ACAAAGAAACCAGTGTAGAGTTCCAGAGCTAAACATTTAAAAAATTATTT
TAAAAACATGAGTTTCACCTTAGGTGTGTN

CTCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTTCAGGGTATAGGCACAGATAA
GGAACTTCTGAATAGGACCCTGGTTGCAAAGGAATGAGCATCAACAGTCA
ACAGGCCAGGCTTCACGAAATTAAAAGCTCCTGTATAGCAAAGGAAACTA
TTAATTGACTTAAGTGGCAGCCTACACAATGGAAAAAGTCTTTGCCAGCT
ATACATCTGACAGAGAATAAGTGTCTTGAATATATAAAGAACTAAAAGAC
CTAAACAACAAGAAAATGAGCAACACAATTTTAAAATGGGCTATGGAACC
GAGCAGAGCTCTCAGAAGAGGAAACACAAAAGGCTGCTAAGCAGTTTTAA
AAGTGTTCACCATCCTTAGCCAACAAGGAAATACAGAATCTACATTGAGA
TTTCACCTTACTCAAGGCAAAAATGGCTAAGATTAAGAAAATAAACGACA
GCAGATACCGCTGAGGCTCTAGGGAATATGAACTGCCATTCACTGATGTG
CAAACTGGTACAACTGTCATGGAAATCAGTTCCTTCAAAAGCTAGAAATA
AATCTACCATGTGACCTCGCTATAGTGCTCCTGGGAGTATATATATATTT
CCTACTACAGAGATGTGTATTCATCCTCGTTCACTGCCACTCTATACAGA
ATAGCCAGGTTAGCCTAGACCTC

Query= MSMg01no262_d15.b1 MSMg01no262_d15.b1 CHROMAT_FILE:
MSMg01no262_d15.b1 PHD_FILE: MSMg01no262_d15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:49 2005
         (683 letters)



>mm_chr3_127098210_127099294
          Length = 1085

 Score = 1257 bits (650), Expect = 0.0
 Identities = 673/686 (98%), Gaps = 10/686 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatttaggaaggaaaagtgcacagctaatgaccacatacataatgtgtggctatg 64
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 969 gaattcatttaggaaggaaaaatgcacagctaatgaccacatacataatgtgtggctatg 910

                                                                       
Query: 65  ctgagtggagccgtgaaggttctgtgtcatcttcatttaaggattaggaatcagggaag- 123
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 909 ctgagtggagcagtgaaggttctgtgtcatcttcatttaaggattaggaatcagggaagt 850

                                                                       
Query: 124 -------tttgcttaaagtcggtgagcagagctagattccagccaggttgtgtggtgctg 176
                  ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 849 taaagaatttgcttaaagtcggtgagcagagctagattgcagccaggttgtgtggtgctg 790

                                                                       
Query: 177 tgt--agtcatcacaccacctctgtattcagccgcctgctggaaaaaccacatttaaagt 234
           |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 tgtaaagtcatcacaccacctctgtattcagccgcctgctggaaaaaccacatttaaagt 730

                                                                       
Query: 235 ggtaggagcagaagtttagtgggatttaaagcacaagcatttcatgatggtgcattgagt 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 ggtaggagcagaagtttagtgggatttaaagcacaagcatttcatgatggtgcattgagt 670

                                                                       
Query: 295 acagatttctttttaacgtttggtcaaaatggtgtcttctctcctctatgaagtacataa 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 acagatttctttttaacgtttggtcaaaatggtgtcttctctcctctatgaagtacataa 610

                                                                       
Query: 355 agaacaagtctggaagccccgccacacacaccccctccgcccccaaattgccctagtaaa 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 agaacaagtctggaagccccgccacacacaccccctccgcccccaaattgccctagtaaa 550

                                                                       
Query: 415 tcccgcggggtttgtttcttctgtttcagaaaagaaattaaatatctccctttgctctta 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 tcccgcggggtttgtttcttctgtttcagaaaagaaattaaatatctccctttgctctta 490

                                                                       
Query: 475 ctttataatctagacacacacacaaacccccacaaaaatcaaaccctgttgcagatctgg 534
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ctttataatctagacacacacacaaacccccacaaaaatcaaaccctgttgcagatctgg 430

                                                                       
Query: 535 ttctgtgttgactgacgtgatccaccgtttttagagatagcaccacatcctctgtttaag 594
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ttctgtgttgactgacgtgatccaccgtttttagagatagcaccacatcctctgtttaag 370

                                                                       
Query: 595 caagtatacactacaaagaaaccagtgtagagttccagagctaaacatttaaaaaattat 654
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 caagtatacactacaaagaaaccagtgtagagttccagagctaaacatttaaaaaattat 310

                                     
Query: 655 tttaaaaacatgagtttcaccttagg 680
           ||||||||||||||||||||||||||
Sbjct: 309 tttaaaaacatgagtttcaccttagg 284


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1085
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1075
Effective search space:   723475
Effective search space used:   723475
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)