BAC Information

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BAC

Clone NameMSMg01-262E19
Chromosome3 (Build37)
Map Location 97,431,488 - 97,564,475
singlet/doubletdoublet
Overlap geneFmo5, Prkab2, Pde4dip
Upstream gene6330549D23Rik, Rbm8a, Pex11b, Itga10, Ankrd35, Pias3, Polr3c, Zfp364, Cd160, Pdzk1, Gpr89, Gja8, 9230114J08Rik, Gja5, Acp6, Bcl9, Olfr1402, Chd1l
Downstream geneSec22b, EG433632, LOC100042975, Notch2, Adam30, LOC622561, Reg4, Hmgcs2, Phgdh, Zfp697, LOC100043461, Hsd3b4, LOC100043456, EG545555, LOC676433, Hsd3b5, LOC668543, Hsd3b2, Hsd3b3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-262E19.T7 (MSMg01no262_e19.b1)MSMg01-262E19.TJ (MSMg01no262_e19.g1)
ACCAG404441AG404442
length723749
length of high quality
(start - end)		654 (45 - 698)428 (69 - 496)
definitionCHROMAT_FILE: MSMg01no262_e19.b1 PHD_FILE: MSMg01no262_e19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:55 2005CHROMAT_FILE: MSMg01no262_e19.g1 PHD_FILE: MSMg01no262_e19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,563,828 - 97,564,475)(97,431,488 - 97,431,915)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTGCACCCTTTCGATTCTTAGCAATGATTCAAAGCTGGGTGCAGT
GATGCAGGCTTGTAATCTTAGCACCTGAGAAGCTAGATTCTGGGATTTGA
GGCCAGACTGGGATTATGAGACCCTGTCTCAAAACAAAACAAGAAAAAAA
AATATGGTTTTCAGTGTCAGTTGTTAGTTATAAGATTACATTGCTTATAA
AAGTAACAAAGTCGATATTTTGTATCCATTAACCCTACCCATTCCTCCGG
TTGGCCTAGAACATTAGTCCTTACTCATCATAGCCAGCGTCAAAAGCTCT
CATCCTTTGTAGATCTAAATAAATTTCATCTCTGCCAAGAGCCTTTTTTA
TATGACCTGTCGAAATGAATAGTCTTCTAGTATGACTACTTCCTCAATAA
ACCAAGACTAATGGGAGCCAGAACTAAGTGTTTGCCTGCGTAGTGCTCCC
TACTCACAGCGCTCTGTATTTTATAGTGTCAGAAACAAAGCAGTAACCAG
CACTGGGGTAACCAAACCCCTCACTTCCTCTGCTCAGTCCCTTGCAGGAA
GGTATTTAAAGCCAGCTGTAACCCCAGGCTCTGCAAGGTTGGGTCTTCGG
GAAGTTTGAAAGTCCAGGAAAAGGAAAGCATGAATAGCGCTTCTTTTACT
TTCCCTAAGGAGAAGGGGCTGGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGTGCAGGGCAGACCCAAACTGATTATAGGCA
GTTCAATCCCATATGGACTTGGAGGCTCCATGCACCCACGATGTGGTAGA
GTGTCATAGGTTCCCACTCTTCCTGTTTGCTGTGTTTCCATTCATGTAGA
CACCGTACTTGGCAGGAGTCTTTCTGAGACAGCAAAGGATTCTCCAAGTC
AATGAATTATTTTAAGCAGTTATTTAATAAACAACTGCTTAGTTAAAAAG
CAGTTCAACTAACAGGTAACAGCTGGTGTTAAGAAAAAAAGAACAACAGA
GAAGTGAGGGAATGGGAGAAGGGCTTGTTGCAAAATCCCTCAGGAGAGAG
TTGTGTGTGGCGGGGAGCCCTTGCTGGAGCCAGCCTGCTGGGGTTGCATG
GCTGGCCTCCCTGCCTTGCTCCGAGTTTTCCAACTGCACGCTGGAGGTGA
TTATAGTCATGCTTGTCTCCTGGGCTGGCTCACAGGCTTACATAATTGAC
TTCCTTTATGCCATCTGAACTATATACTGTAAACCCTCATGTTGACCATT
ATTTTGTAAGCCATATACTGAACCCTGAACCTTCAGATCCCAGGATCTGT
TTTTACCTCTTTTAACCCTGTTCTGTATCCCATTTATACCCCTCATTATT
GTTATTTCTATTCTTCCTATCCTTCGCATCCCCTTCTGTTTTTCTGCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no262_e19.b1 MSMg01no262_e19.b1 CHROMAT_FILE:
MSMg01no262_e19.b1 PHD_FILE: MSMg01no262_e19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:55 2005
         (654 letters)



>mm_chr3_97563481_97564534
          Length = 1054

 Score = 1207 bits (624), Expect = 0.0
 Identities = 642/648 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattgcaccctttcgattcttagcaatgattcaaagctgggtgcagtgatgcagg 64
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 995 gaattcattgcacccttttgattcttagcaatgattcaaagctgggtgcagtgatgcagg 936

                                                                       
Query: 65  cttgtaatcttagcacctgagaagctagattctgggatttgaggccagactgggattatg 124
           |||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 935 cttgtaatcttagcagttgagaagctagatcctgggatttgaggccagactgggattatg 876

                                                                       
Query: 125 agaccctgtctcaaaacaaaacaagaaaaaaaaatatggttttcagtgtcagttgttagt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 agaccctgtctcaaaacaaaacaagaaaaaaaaatatggttttcagtgtcagttgttagt 816

                                                                       
Query: 185 tataagattacattgcttataaaagtaacaaagtcgatattttgtatccattaaccctac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 tataagattacattgcttataaaagtaacaaagtcgatattttgtatccattaaccctac 756

                                                                       
Query: 245 ccattcctccggttggcctagaacattagtccttactcatcatagccagcgtcaaaagct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 ccattcctccggttggcctagaacattagtccttactcatcatagccagcgtcaaaagct 696

                                                                       
Query: 305 ctcatcctttgtagatctaaataaatttcatctctgccaagagccttttttatatgacct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 ctcatcctttgtagatctaaataaatttcatctctgccaagagccttttttatatgacct 636

                                                                       
Query: 365 gtcgaaatgaatagtcttctagtatgactacttcctcaataaaccaagactaatgggagc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gtcgaaatgaatagtcttctagtatgactacttcctcaataaaccaagactaatgggagc 576

                                                                       
Query: 425 cagaactaagtgtttgcctgcgtagtgctccctactcacagcgctctgtattttatagtg 484
           |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 575 cagaactaagtgtttgcctgcgtagtgctccccacccacagcgctctgtattttatagtg 516

                                                                       
Query: 485 tcagaaacaaagcagtaaccagcactggggtaaccaaacccctcacttcctctgctcagt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tcagaaacaaagcagtaaccagcactggggtaaccaaacccctcacttcctctgctcagt 456

                                                                       
Query: 545 cccttgcaggaaggtatttaaagccagctgtaaccccaggctctgcaaggttgggtcttc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cccttgcaggaaggtatttaaagccagctgtaaccccaggctctgcaaggttgggtcttc 396

                                                           
Query: 605 gggaagtttgaaagtccaggaaaaggaaagcatgaatagcgcttcttt 652
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 gggaagtttgaaagtccaggaaaaggaaagcatgaatagcgcttcttt 348


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space:   672336
Effective search space used:   672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no262_e19.g1 MSMg01no262_e19.g1 CHROMAT_FILE:
MSMg01no262_e19.g1 PHD_FILE: MSMg01no262_e19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:55 2005
         (428 letters)



>mm_chr3_97431288_97432115
          Length = 828

 Score =  812 bits (420), Expect = 0.0
 Identities = 426/428 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtgcagggcagacccaaactgattataggcagttcaatcccatatggacttggaggctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtgcagggcagacccaaactgattataggcagttcaatcccatatggacttggaggctc 260

                                                                       
Query: 61  catgcacccacgatgtggtagagtgtcataggttcccactcttcctgtttgctgtgtttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catgcacccacgatgtggtagagtgtcataggttcccactcttcctgtttgctgtgtttc 320

                                                                       
Query: 121 cattcatgtagacaccgtacttggcaggagtctttctgagacagcaaaggattctccaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cattcatgtagacaccgtacttggcaggagtctttctgagacagcaaaggattctccaag 380

                                                                       
Query: 181 tcaatgaattattttaagcagttatttaataaacaactgcttagttaaaaagcagttcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcaatgaattattttaagcagttatttaataaacaactgcttagttaaaaagcagttcaa 440

                                                                       
Query: 241 ctaacaggtaacagctggtgttaagaaaaaaagaacaacagagaagtgagggaatgggag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctaacaggtaacagctggtgttaagaaaaaaagaacaacagagaagtgagggaatgggag 500

                                                                       
Query: 301 aagggcttgttgcaaaatccctcaggagagagttgtgtgtggcggggagcccttgctgga 360
           |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 501 aagggcttgttgcaaaatccctcaggagagagttgtgtgtgatggggagcccttgctgga 560

                                                                       
Query: 361 gccagcctgctggggttgcatggctggcctccctgccttgctccgagttttccaactgca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gccagcctgctggggttgcatggctggcctccctgccttgctccgagttttccaactgca 620

                   
Query: 421 cgctggag 428
           ||||||||
Sbjct: 621 cgctggag 628


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space:   343161
Effective search space used:   343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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