BAC Information

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BAC

Clone NameMSMg01-262F16
Chromosome3 (Build37)
Map Location 137,757,988 - 137,954,332
singlet/doubletdoublet
Overlap geneMttp, Rg9mtd2, 4930579F01Rik, Adh7, Adh1
Upstream geneLOC100039447, Emcn, EG229862, Ddit4l, LOC668874, H2afz, Dnajb14, Map2k1ip1, Dapp1, EG329763, LOC100039528
Downstream geneAdh6a, LOC639769, Adh4, Adh5, Metap1, EG383925, EG668879, Eif4e, EG545570, LOC668881, LOC668882, Ppia-ps3_1437.1, Tspan5, LOC620771, Rap1gds1, EG229879, B930007M17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-262F16.T7 (MSMg01no262_f16.b1)MSMg01-262F16.TJ (MSMg01no262_f16.g1)
ACCAG404480AG404481
length718722
length of high quality
(start - end)
246 (73 - 318)249 (74 - 322)
definitionCHROMAT_FILE: MSMg01no262_f16.b1 PHD_FILE: MSMg01no262_f16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:59 2005CHROMAT_FILE: MSMg01no262_f16.g1 PHD_FILE: MSMg01no262_f16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(137,757,988 - 137,758,231)(137,954,084 - 137,954,332)
sequence
CTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGG
AATTCCATTGAATTTCCAAATCAATAGCTAGACCACCCTGGATCTCCATA
TTGGCCTTTAGTCCAGATTGCAGCTGAATATCCTAGAAGCAAAAAGTACA
GTATAAGCAGTTAGTTAACACATCTTTCAGAGACACACTTGGCTTCCTGA
TCTACAGTCCTCTGCTGGAGGACTTTGAAAATCAATGCCCATCAATTCCT
TTGTTTCCATGCAAGCCCAGGACCTCTCACCTACTAACTAGTGTTCTACC
ATCACACTATACCCCGTATTGTTAGAAGGCTTAGAAATACAGTATCCTGA
TCTTGGTCACCAGCGAAGGCATTGCTGAGATGCTAAATAAGTCAGGCAAA
GTAGTGGAGGGACAGAACATCAATTGAGAAGGCTGTTTTCCTGCAATCAG
TGCCTCTCTTTGTGAGGGGCCATTTTTTTTCAATGTGTGGCTTTAGGCAG
TGAGCTTATCACTATCTGGGAACAGTTTCATAATGTAATCTCTGATTTAT
AAACTCTGATGAAGAATGGAGGCCAGTAATCTTGTTCCACTATGCCTTCA
TTGTGATTCTGACACAACTGATTTTGAGAACCACTGGATCCAGAGGATGA
CGGTATTTCCTTCTGAAACATGGCTTATTTGTAATAGCTAATGATCGGCA
CCGACCGCTGTTCGATTT
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCAGTAATGGTTATAACAGCACAGGTTA
TGACTGTTCAGTGGGAGTAAGAAATTGTCAAATGCCAATGTTTCTTTTCT
TCAACTCTGGAGTAATGTCCTTACAACTGTGGCCTGGCTCTCTAGTCCTG
CAGCAGCCTGTTAAACACCACGAGGAGTATAACTCCTAGTCCATTGCTCT
TCTTCCCTGCCCTCCACCCCCACTCTACTATTTCTGGAGGTGTCCAGCTG
TTATTTCAGACTGGCTTTTATTGAAGGGAACGACTCCATATTCATTGTTC
ACAAAAGAGTATATGAGCACACCGTCCATATGCGAGGGTCCCTTTTAGTC
GCTAAGACAGAGACTCTCCAGCTTCCAGACTAGCTCTGTCCATTGGCATG
CTGTGGCTTTACTGCACACTCATGCATCTCATAAAGAAGGAAGTTCATAC
AGTGTAAAGGTTGTGCTTGGAAGACTGAGCACGTATGACATTCTGTGCGC
TTTGAAGTATAAAGATTGATCTGCTTCCATGAGTGTCAATGACTGAAATT
CCATATAGAAAATAATGCCATACGTCCACAAGACACCTTGTCCCCTGTAC
TCAAAATGATCTAATACAATCATATAACCATGTTTGGCAACTCACCGCTA
CACTGTTTGAATTTTAACTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no262_f16.b1 MSMg01no262_f16.b1 CHROMAT_FILE:
MSMg01no262_f16.b1 PHD_FILE: MSMg01no262_f16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:59 2005
         (246 letters)



>mm_chr3_137757788_137758433
          Length = 646

 Score =  472 bits (244), Expect = e-138
 Identities = 244/244 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatagctagaccaccctggatctccatattggcctttagtccagattgcagctgaatatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatagctagaccaccctggatctccatattggcctttagtccagattgcagctgaatatc 260

                                                                       
Query: 61  ctagaagcaaaaagtacagtataagcagttagttaacacatctttcagagacacacttgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctagaagcaaaaagtacagtataagcagttagttaacacatctttcagagacacacttgg 320

                                                                       
Query: 121 cttcctgatctacagtcctctgctggaggactttgaaaatcaatgcccatcaattccttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttcctgatctacagtcctctgctggaggactttgaaaatcaatgcccatcaattccttt 380

                                                                       
Query: 181 gtttccatgcaagcccaggacctctcacctactaactagtgttctaccatcacactatac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtttccatgcaagcccaggacctctcacctactaactagtgttctaccatcacactatac 440

               
Query: 241 cccg 244
           ||||
Sbjct: 441 cccg 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no262_f16.g1 MSMg01no262_f16.g1 CHROMAT_FILE:
MSMg01no262_f16.g1 PHD_FILE: MSMg01no262_f16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:59 2005
         (249 letters)



>mm_chr3_137953884_137954532
          Length = 649

 Score =  458 bits (237), Expect = e-133
 Identities = 246/249 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagtaatggttataacagcacaggttatgactgttcagtgggagtaagaaattgtcaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 cagtaatggttataacagcacaggttatgactgttcagtgggagtaagaaattgtcaaat 390

                                                                       
Query: 61  gccaatgtttcttttcttcaactctggagtaatgtccttacaactgtggcctggctctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gccaatgtttcttttcttcaactctggagtaatgtccttacaactgtggcctggctctct 330

                                                                       
Query: 121 agtcctgcagcagcctgttaaacaccacgaggagtataactcctagtccattgctcttct 180
           |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 329 agtcctgcagcagcctgttaaacaccacaaggagtataactcctagcccattgctcttct 270

                                                                       
Query: 181 tccctgccctccacccccactctactatttctggaggtgtccagctgttatttcagactg 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tccctgccccccacccccactctactatttctggaggtgtccagctgttatttcagactg 210

                    
Query: 241 gcttttatt 249
           |||||||||
Sbjct: 209 gcttttatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)